Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3194 ATGTCTCACTTCGGTAGGTCAGGTCCTCCAGACATCTCCGATACCTACTCTCTTCTCGTTCTCAACATCACCTTCCGTACCACCGCCGATGACCTATTTCCGTTGTTTGATAAGTATGGCAAGGTTGTTGACATCTTCATCCCCAAAGATCGAAGGACCGGTGAATCAAGGGGTTTCGCTTTTGTGCGTTACAAATATGCTGATGAAGCTTCCAAGGCTGTTGATAGGCTCGACGGAAGAATGGTTGATGGTCGTGAAATAACTGTTCAGTTTGCAAAATATGGCCCTAATGCTGAGAGGATTCAGAAAGGAAGGATTATTGAAACATCCCCGAGATCAAAGAGCTCAAGGAGCCGCAGTCCCAGCAAGAGAAGTAGGCATCGTGATGACTACAAAGAAAAGGATTACAGGAGGAGAAGTCGCAGCAGGAGTTATGATAGGCATGAACGTGACAGGCACCGTGGGAGAGATAGGGACCATCGTCGCCGAAGCAGAAGCCGTAGTGCTAGTCCTGGTTACAAGGGCCGTGGAAGGGGGCGCCATGATGATGAGCGTCGTAGTAGAAGCCCAAGCAGATCAGTGGACAGCCGCTCCCCAGTGCGACGCAGTTCTATTCCTAAAAGGAGCCCGTCTCCAAAGAGGAGCCCTTCTCCAAAGAGAAGCCCTTCTCTGAAGAGGAGCATATCCCCCCAAAAGAGTGTTTCCCCCAGGAAAAGTCCACTCCGTGAAAGTCCTGATAATCGTAGCCGTGGTGGAAGGTCTCTTACGCCTCGCAGTGTCTCACCACGAGGTCGTCCTGGTGCTTCTCGAAGCCCCTCTCCTCGAAATTCAAATGGTGATGAATAA 846 0.5059 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIETSPRSKSSRSRSPSKRSRHRDDYKEKDYRRRSRSRSYDRHERDRHRGRDRDHRRRSRSRSASPGYKGRGRGRHDDERRSRSPSRSVDSRSPVRRSSIPKRSPSPKRSPSPKRSPSLKRSISPQKSVSPRKSPLRESPDNRSRGGRSLTPRSVSPRGRPGASRSPSPRNSNGDE* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3194 281 MobiDBLite consensus disorder prediction 123 153 - -
Mtr4g3194 281 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Mtr4g3194 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Mtr4g3194 281 MobiDBLite consensus disorder prediction 100 281 - -
Mtr4g3194 281 MobiDBLite consensus disorder prediction 154 169 - -
Mtr4g3194 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Mtr4g3194 281 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 281 - -
Mtr4g3194 281 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 281 - -
Mtr4g3194 281 MobiDBLite consensus disorder prediction 221 238 - -
Mtr4g3194 281 SMART rrm1_1 17 90 IPR000504 GO:0003723
Mtr4g3194 281 MobiDBLite consensus disorder prediction 175 192 - -
Mtr4g3194 281 Gene3D - 4 105 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3194 Mtr-Chr4 45408505 45413510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3194 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 33.750 3.21e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3194 K12891 - gmx:100778928 317.39