Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3183 ATGGAAAACGACGACGTTGATATGATCGGCGCCGATAACAACGAAGCCGATTTGGATGATATGAAGAAGCGGTTGAAGGAAATGGAAGATGAAGCTGCTGCTTTAAAGGAGATGCAGGCTAAGGTCGAGAAAGAAATGGGATCTGTTCAAGATCCCGCTAATGCTTCTGCAAGTCAGATTAATAGAGAGGAAGTTGATGCTCGATCAATCTTTGTGGGCAATGTGGACTATGCATGTACTCCTGAAGACGTGCAGCAGCATTTCCAATCGTGTGGTACTGTAAACCGTGTTACTATTCGCACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAATTTGTCGAAGTAGAAGCTGTTCAAGAGGCTCTTTTGTTGAATGAATCTGAACTACATGGACGTCAATTGAAGGTTACTGCTAAGAGGACCAATGTACCTGGGATGAAACAATTTCGTCCCCGCCGGCCTAGTAATCCTTACATGGGATTTCGAGGTAGAACTCCATATGCACCTCCTTTTGCCTATGCTCCCGCTCCTTATGGATACGGAAAAATACCAAGGTTCAGAATGGGGATGCGTTACAGCCCCTACTATTGA 600 0.4483 MENDDVDMIGADNNEADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAYAPAPYGYGKIPRFRMGMRYSPYY* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3183 199 CDD RRM_II_PABPs 69 140 - -
Mtr4g3183 199 Coils Coil 11 45 - -
Mtr4g3183 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Mtr4g3183 199 SUPERFAMILY RNA-binding domain, RBD 56 168 IPR035979 GO:0003676
Mtr4g3183 199 PANTHER - 4 195 - -
Mtr4g3183 199 SMART rrm1_1 69 140 IPR000504 GO:0003723
Mtr4g3183 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Mtr4g3183 199 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 195 - -
Mtr4g3183 199 Gene3D - 6 141 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3183 Mtr-Chr4 45280845 45286255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3183 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 33.333 4.69e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3183 K14396 - gmx:100784473 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3183 4 45280845 45286255 Mtr4g3183 4 45280845 45286255 ECH