Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3180 ATGGCTTCCCTGTGTCTTCCATCTTCTGGTTGCTGTGAAATTAAAACAAGTTCGGAATATGTACTCCAAAGAACCGTTCAAGACATTGAGGCTAACACAACCACACTAGAAATGATGATGAAGAGAGAAAAGGAAGATGAAGTTGATGGTACATGCTTAACATGGAAGGATATATGGGTAAATACAATTTCAAATGGAAAGAATGGAAGCAAATCAATTCTTCAAGGATTAACTGGTTATGCTAAACCTGGTCAACTCTTGGCCATAATGGGTCCTTCTGGCTGTGGCAAGTCTACACTACTTGATACATTAGCAGGGAGATTAGGCTCAAACACAAGACAAACAGGGGAAATTCTGATCAATGGTCACAAACAAGAACTTTCTTATGGAACCTCGGCTTATGTGACACAAGATGATACCTTATTGACAACCTTAACTGTTAGAGAAGCAGTGTTCTATTCAGCTCAACTTCAGTTACCTAACACAATGTCCAAGGAAGAGAAGAAAGAGAGAGCTGATATTACAATCAAAGAAATGGGTCTGCAAGATGCAATGAACACAAGAATTGGAGGGTGGGGTGTGAAAGGCATAAGTGGGGGTCAAAAAAGGAGAGTTAGCATTTGCATTGAGATCCTAACACGTCCTAGACTTCTATTTCTTGATGAGCCAACTAGTGGACTTGATAGTGCTGCTTCTTACTATGTTATGAAAAGAATTGCTACTTTGGATCATAAAGATGGAATTCGGAGGACTATTATTACATCCATCCATCAACCTAGTACTGAAGTTTTTCAACTTTTTCATAACCTATGTCTTCTGTCTTCAGGTAGAACAGTTTACTTTGGACCTGCTTCTACTGCTTGTGAGTTTTTTGCTTTGAATGGATTTCCATGTCCTCCTCTACAAAATCCTTCTGATCATTTACTTAAAACTATAAACAAGGATTTTGATCAGGATATTGAGACAGGATTGGCAGGGACAGGAACAATCCCTACTGAAAAAGCAATTTGTATTCTTGTGAGTTCATATAAATCATCTGAAATGAGGCAAGATGTTCAAAATGAAGTAGCAGTACTATCTAATAAGCACACTAGCTCAATGGATCACAGGAAGAAAGGACATGTTGGGTTCCTTAATCAATGCTCAGTTCTTATCGAACGGTCATCAATAAACATGTTTCGTGATCCAGGCTATTATTGGTTACGCTTAGTGATATATGTTGCATTGGCTATAAGTTTAGGCACTATTTACTATGATTTGGGTACAAATAATGACTCAATTAAGAATCGAGGTTCACTTCTCTCATTTATCGCTGGATTCTTAACTTTCATGAGCATTGGTGGATTTCCTTCCTTTGTGGAAGACATGAAGGTATTTCAACGAGAAAGACAAAATGGGCATTATGGTGTGATTGCATATGTGATTGGGAACACTTTTTCGTCAATTCCATTCATTTTATTGGTTACAATAATTCCAGCAGCTATAACTTATTACCTCCCTGGTCTACAGAAAGGATTTGAACACTTTTTGTACTTTGCTAGTGTTTTATTTTCTAGCCTAATGTTGGTGGAAAGTCTTATGATGATAGTTGCAAGCATTGTCCCTAACTATCTCATGGGAATCATAACTGGTGCTGGAATTCAAGGAATCATGATTTTGGTTGGAGGGTTCTTTAAATTGCCACATGAAATTCCTAAGCCATTTTGGAGATATCCACTACACTATGTTGCATTTCATACATATGGATTTGAAGGATTGTTCAAGAATGAGTATGAAGGGTTAATATTTTCTACTAAAAACGGACAAGGCACAAATGGTTACATTAGTGGTGAAGAGGTTTTGAGAGATATTTGGCAAAGTAACATGAGTTACTCAAAATGGGTTGATCTTGCAATTTTGCTAGGGATGATTGTTTTGTATCGAGTTTTGTTTCTTGTTATTATCAAAATTACAGAGAAGGTGAAGCCTATTATTGGACCATTATTATCTTGCATGTCACCCAATACAACAATACATGTTGTGGAGAAGCCTGATGCTACTCCTTTGGATGGACAAGTTGTATAA 2064 0.3726 MASLCLPSSGCCEIKTSSEYVLQRTVQDIEANTTTLEMMMKREKEDEVDGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLGSNTRQTGEILINGHKQELSYGTSAYVTQDDTLLTTLTVREAVFYSAQLQLPNTMSKEEKKERADITIKEMGLQDAMNTRIGGWGVKGISGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYYVMKRIATLDHKDGIRRTIITSIHQPSTEVFQLFHNLCLLSSGRTVYFGPASTACEFFALNGFPCPPLQNPSDHLLKTINKDFDQDIETGLAGTGTIPTEKAICILVSSYKSSEMRQDVQNEVAVLSNKHTSSMDHRKKGHVGFLNQCSVLIERSSINMFRDPGYYWLRLVIYVALAISLGTIYYDLGTNNDSIKNRGSLLSFIAGFLTFMSIGGFPSFVEDMKVFQRERQNGHYGVIAYVIGNTFSSIPFILLVTIIPAAITYYLPGLQKGFEHFLYFASVLFSSLMLVESLMMIVASIVPNYLMGIITGAGIQGIMILVGGFFKLPHEIPKPFWRYPLHYVAFHTYGFEGLFKNEYEGLIFSTKNGQGTNGYISGEEVLRDIWQSNMSYSKWVDLAILLGMIVLYRVLFLVIIKITEKVKPIIGPLLSCMSPNTTIHVVEKPDATPLDGQVV* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3180 687 Pfam ABC-2 type transporter 380 591 IPR013525 GO:0016020|GO:0140359
Mtr4g3180 687 Pfam ABC-2 type transporter 257 312 IPR043926 GO:0140359
Mtr4g3180 687 SMART AAA_5 83 272 IPR003593 -
Mtr4g3180 687 Gene3D - 53 291 IPR027417 -
Mtr4g3180 687 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 53 300 IPR003439 GO:0005524
Mtr4g3180 687 Pfam ABC transporter 75 225 IPR003439 GO:0005524
Mtr4g3180 687 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 4 682 - -
Mtr4g3180 687 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 4 682 - -
Mtr4g3180 687 ProSitePatterns ABC transporters family signature. 197 211 IPR017871 GO:0005524
Mtr4g3180 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 292 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3180 Mtr-Chr4 45236390 45245655 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3180 73 285 Calmodulin-binding Proteins AT2G36910 28.311 4.72e-11 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3180 4 45236390 45245655 Mtr4g3180 4 45236390 45245655 ECH