Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3166 ATGGGACTTCATCACAGAAAACTCTTATCTGAATCTGAATGTGAACGCATCTGTGATGAGGATTGTACCACAGCCACAAGCTCAAACTGTGTTAATTGCCTCAAATTCTGCAATTCCTACAATCCTCCACCAACACCATCTGATCACACCAAACACAAAACCACCACTTACTTGATCATAAGTTTTTCTATTGTAGCAGCTATTTTCCTTGTTCTTTGCTGCTATGCATTCTATGTCAAGTTTTTCTCCCGTAGGAACAGGTCAAGAAGAAGAGCCTTGTTAACAAGGCAACAAACAGAACAAGGTTTTGTTGTTGGTGAGGAACATGATGATGGTTCTGTTGTGGACCACCCTATATGGTATATTCGAACTCCTGGTCTTCAACAATCAATTATTAATGCAATCACTGTTGTTAAGTATAAGAAAGATGAAGGCTTGATTGATGGATCAGATTGTTCTGTTTGTTTGAGTGAGTTTGAAGAAGATGAGAATCTTAGACTTTTGCCAAAGTGTAACCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGATCACACATTAACTGTCCTATGTGTAGGGCTCCTATTGTTGTTGACCCTTTGAGGATTCCATCTATGGAGCCTAATGTTTTTGTGGAAAGTTCTCAGATTGAAGTTTTTGAAAATAGTGATGGAAATGGAGATAGTGTTGTTTCTCAGTTGAGAAATGGAGAAGAGGAACCAGGGGAAGAGGTTGAGGAAAATGGAAGAAGGGTCTGTGAAGATGGGAGTTCAGGTTTAGAGATGGTAAATATGCAGCCAAGAAGATCAGTGTCTCTTGATTCTTCTGCTGCTGCTAAGATCAATCTTGCTCTTTCCAAGTTTCTATCAGTGGAATCTCAAAGGAATTGTAATAGGGAGCAGGTAGGGGAAGTCAATGAACAAATTGTTTCAAAGAAGGTTGGTGAAAATGGGAATATGGTAAATATGCATAGTGCTCCTTGTTCAATGAATAGGTCAAGATCCTTCAATGGTAAACACCTACTATCTTTGTATAGTAGCAGTCAGAAGAAGAAAAATGCTCCACCAAGAAGCTTTTGA 1083 0.3878 MGLHHRKLLSESECERICDEDCTTATSSNCVNCLKFCNSYNPPPTPSDHTKHKTTTYLIISFSIVAAIFLVLCCYAFYVKFFSRRNRSRRRALLTRQQTEQGFVVGEEHDDGSVVDHPIWYIRTPGLQQSIINAITVVKYKKDEGLIDGSDCSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLRSHINCPMCRAPIVVDPLRIPSMEPNVFVESSQIEVFENSDGNGDSVVSQLRNGEEEPGEEVEENGRRVCEDGSSGLEMVNMQPRRSVSLDSSAAAKINLALSKFLSVESQRNCNREQVGEVNEQIVSKKVGENGNMVNMHSAPCSMNRSRSFNGKHLLSLYSSSQKKKNAPPRSF* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3166 360 SMART ring_2 152 193 IPR001841 -
Mtr4g3166 360 Pfam Ring finger domain 151 194 IPR001841 -
Mtr4g3166 360 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Mtr4g3166 360 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 348 IPR044675 -
Mtr4g3166 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 200 IPR013083 -
Mtr4g3166 360 CDD RING-H2_PA-TM-RING 151 194 - -
Mtr4g3166 360 PANTHER RING-H2 FINGER PROTEIN ATL54 12 348 - -
Mtr4g3166 360 SUPERFAMILY RING/U-box 142 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3166 Mtr-Chr4 45148355 45149786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3166 62 205 C3H Transcription Factor Family AT1G72220 52.414 3.00e-46 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3166 - - mtr:MTR_4g093830 694.886