Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3157 ATGAACTGGCAACAACGTTGCCTTCCAATCAACCCATCGCAGCAAGAACTGTTCCGTTTGCTCTTAGAGGGGAATATTATGACTAGAAAGAAGATACAGATCAAGAAAATCGACAATATCAGTTCGAGGCAAGTGACTTTCTCTAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCAGGAGCTTTCAACCCTTTGTGATGCAGACATTGCTCTTATGGTTTTTTCTGCAACTAGTAAGCTCTTTGAGTATGCTAGTTCAAGTATGCAACAAGTAATTGAAAGGCGTAATGGATATTCAGCAAATCATAGATTATTGGACTATCCATCTACTGATGATCAGCTTCAGGTTGAGAGTGACTCAAATCGCGATACACTGCGAAAGAAATTAGAAGATAAATCTCGTGAACTGAGGCAATTGAACGGAGAAGATCTGCAAGAATTGACAGTACAAGAACTCCAGAAACTAGAGGTGCTTCTTAAAAGAAGTTTGTCTAGTGTTTCCAAAATAAAGGATGAAATGTTTATGCGAGACATCGACACCCTTAAGAGAAAGGAAGTGGAACTGATGGAAGAAAACCGAAGATTGAAACATGTGGTACCAGACCTTATAAATGTACGATGGCAACAATCATTGGAAACTGTTATCAGTGGTTCGTCTTTTTCTCTTGAAGACGATGGCAGTGACACTTCTCTCAAGTTGGGGTTACCATTTCTTAAATAA 720 0.3944 MNWQQRCLPINPSQQELFRLLLEGNIMTRKKIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALMVFSATSKLFEYASSSMQQVIERRNGYSANHRLLDYPSTDDQLQVESDSNRDTLRKKLEDKSRELRQLNGEDLQELTVQELQKLEVLLKRSLSSVSKIKDEMFMRDIDTLKRKEVELMEENRRLKHVVPDLINVRWQQSLETVISGSSFSLEDDGSDTSLKLGLPFLK* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3157 239 SUPERFAMILY SRF-like 28 111 IPR036879 GO:0003677|GO:0046983
Mtr4g3157 239 ProSiteProfiles K-box domain profile. 115 211 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr4g3157 239 SMART madsneu2 27 86 IPR002100 GO:0003677|GO:0046983
Mtr4g3157 239 Coils Coil 178 198 - -
Mtr4g3157 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 36 83 IPR002100 GO:0003677|GO:0046983
Mtr4g3157 239 Coils Coil 122 142 - -
Mtr4g3157 239 CDD MADS_MEF2_like 29 103 IPR033896 GO:0000977|GO:0045944
Mtr4g3157 239 Gene3D - 39 111 IPR036879 GO:0003677|GO:0046983
Mtr4g3157 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 26 207 - -
Mtr4g3157 239 PRINTS MADS domain signature 29 49 IPR002100 GO:0003677|GO:0046983
Mtr4g3157 239 PRINTS MADS domain signature 49 64 IPR002100 GO:0003677|GO:0046983
Mtr4g3157 239 PRINTS MADS domain signature 64 85 IPR002100 GO:0003677|GO:0046983
Mtr4g3157 239 Pfam K-box region 118 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr4g3157 239 ProSiteProfiles MADS-box domain profile. 27 87 IPR002100 GO:0003677|GO:0046983
Mtr4g3157 239 ProSitePatterns MADS-box domain signature. 29 83 IPR002100 GO:0003677|GO:0046983
Mtr4g3157 239 PANTHER - 26 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3157 Mtr-Chr4 45083917 45093936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3157 27 236 MADS-box Gene Family AT4G24540 49.321 6.33e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr4g3157 K-box 8.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3157 - - aprc:113860188 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3157 4 45083917 45093936 Mtr4g3157 4 45083917 45093936 ECH