Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3144 ATGGAAATGCTGAATTCGTCTGAGAACGGGTCAATGGCCATGCACTGTACCAATGTAGCTTACTTTTCTGACGAAGGAGAAGAACCTCAGCCCATTACTGCTTCTGTTCCACTCTCTCGTGCTAGTGAACTCACCATTTCCTTTGAAGGCGAGGTTTATGTTTTCCCTTCCGTTACGCCAGAAAAGGTACAGGCTGTATTGTTACTCTTAGATGGGAAGGAGACACGCAATAGCGTACCCACTTCTGACTTTCCGGTGCAGCAAAACTGTCGGGACATTTGGGGGAAAAATGATCCTTTCCGTAATTCAAAGGTCTCACGGAGATCTGCATCACTTGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGAGAAGAAAATCCGCTACACTTGCCGTAAGGAGGTTGCTGAGAGGATGCAACGGAAGAATGGGCAGTTTGCATCGTTGAAGGAAGAATGCAGTTCTCCTGCTGAAAACCAGGATTTTAGCAATGGTTCTCCTTTCCCAGAATCCATTGAGCGTAGATGCCAGCATTGTGGAATTGCTGCAAAGTCTACTCCGGTAATGCGTCGAGGACCGGCTGGTCCAAGAACTCTATGCAATGCTTGTGGGCTCATGTGGGCAAATAAGGGAACACTGAGAGATCTCGGCAAAGCAGGAAGGATTGCTTTTGAACAGACTGAACTGGATTTTTCAACAACAGATCCAGAAAATTCATGTGCTGCACAGGACAAGAAGGAAAGCCCCCATGCAACAAAGCCTTTGCCAATGGATGCCAGACAGTCACCTGAGATGATAATTGAGCAGTATATGCTTGAAGCTGCTGAAGCAGTTACTGACAACTTGTCCATCCAAGTGGAGAATAATGCTCTTGATCTGCACGAGCAGGATAATACTATGGCGGATTTTGTTGATGCTTCTGGGACTGAATTTGAGATTCCTTTATGTTTTGATGATCAGGTCAATATTGATGATTCCAATATGAGGACTTACTGGCTGTGA 1005 0.4527 MEMLNSSENGSMAMHCTNVAYFSDEGEEPQPITASVPLSRASELTISFEGEVYVFPSVTPEKVQAVLLLLDGKETRNSVPTSDFPVQQNCRDIWGKNDPFRNSKVSRRSASLVRFREKRKERCFEKKIRYTCRKEVAERMQRKNGQFASLKEECSSPAENQDFSNGSPFPESIERRCQHCGIAAKSTPVMRRGPAGPRTLCNACGLMWANKGTLRDLGKAGRIAFEQTELDFSTTDPENSCAAQDKKESPHATKPLPMDARQSPEMIIEQYMLEAAEAVTDNLSIQVENNALDLHEQDNTMADFVDASGTEFEIPLCFDDQVNIDDSNMRTYWL* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3144 334 ProSiteProfiles GATA-type zinc finger domain profile. 171 229 IPR000679 GO:0006355|GO:0043565
Mtr4g3144 334 Gene3D - 172 222 IPR013088 GO:0006355|GO:0008270
Mtr4g3144 334 Pfam tify domain 41 70 IPR010399 -
Mtr4g3144 334 ProSiteProfiles CCT domain profile. 108 150 IPR010402 GO:0005515
Mtr4g3144 334 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 173 223 - -
Mtr4g3144 334 MobiDBLite consensus disorder prediction 230 258 - -
Mtr4g3144 334 Pfam CCT motif 108 149 IPR010402 GO:0005515
Mtr4g3144 334 SMART tify_2 37 72 IPR010399 -
Mtr4g3144 334 Pfam GATA zinc finger 177 213 IPR000679 GO:0006355|GO:0043565
Mtr4g3144 334 SMART GATA_3 171 224 IPR000679 GO:0006355|GO:0043565
Mtr4g3144 334 ProSiteProfiles Tify domain profile. 37 72 IPR010399 -
Mtr4g3144 334 CDD ZnF_GATA 176 219 IPR000679 GO:0006355|GO:0043565
Mtr4g3144 334 PANTHER GATA TRANSCRIPTION FACTOR 28 31 325 IPR045280 GO:0006355
Mtr4g3144 334 ProSitePatterns GATA-type zinc finger domain. 177 204 IPR000679 GO:0006355|GO:0043565
Mtr4g3144 334 Coils Coil 133 153 - -
Mtr4g3144 334 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 31 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3144 Mtr-Chr4 44972621 44976819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3144 40 220 Tify Gene Family AT1G51600 57.447 5.38e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr4g3144 CCT 1.3e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3144 - - mtr:MTR_4g093730 674.47