Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3139 ATGGCTTCTTCATGGTTTCTCAAACTAACTTTCAAATGCCTTTATCATTTTGCATGGCCTCTTGTTGCTCTGGTGTATCCTATGTGTGCTTCCGTACAAGCAATTGAAACTGACTCCTATGCAGAAACTAAGGATTTGATCTCATATTGGATACTTCTCTCCTTAATTTACCTCTTTGAATATGCTTTTATGAACCTTCTTCTATGGTTTCAGCTCTGGCCCTACACTAAGCTAATGATCATCTTCTGGCTCATCATACCAGACTTTGGACGAGCTTCTTATGTTTATAATAAACTCAGTCGCTTTCTGAAACCGCACATAGTCACATGGGGGTTAAATAACTCCTGGAAGAAGTGGTTTTTTGAGAAAGATAACTTTTTAATGCATGCAGAGATATATATGAAAGAGAATGGAACTGAAGCCTTAGAGAAACTCATTGCTAGCAAGAACACAATGTGTAGGCCTGATGCAGAAGCGACAAATGAAATTTCAGCTACCGATGATAAAGAAATGTTAAAGACAAATGGAGAAAGGCTCCAAACAGAGCAAAAAGATATCCAAGGTTTGGAAGCTATTGAGAAAAAAGAAATTCCTGCAACCAAGCAAGATATTCCTGTCATGCTAAAAATTAGGCCAAGTCAAAATGCATCATCAGTCACAGTGGAAACCAAAGGAACAGCAGAGAGTGAAAGGGCTGGTGGAGAAGTTCCTCGGAGTTCTACACAGAAGGAAGTGCAGAGAGAGTGGACTTGTGCTATATGTTTGGTAACAACATCGCGTGAGAAAGACTTGATTTCCCACCTTAATGGAAGGAAACACAGGGATACTAGTGAAGCTTTAATATCAAAGAAGCAACCTACCCGGCAGAAGCAAAAGGGTGCAGAAGCGACAACAAATAAAACCATAGCTACTGATAATAAAAAAATACCCAAGGATAATCCTGTCATGCCTAAAATTGCGTCAAGTCAAAATGCATCATCAGCCACAGTAGAAACTAAAGGAACAGCAAAGAGTGACAAAGCTGGTGAAGAGTATCTCAAGAGTTCTACGCAGAAGGAACTGCAGGAAGAGTGGCCTTGCGCTTTGTGCTCGGTAACAACATCGAGCAAGATAACCTTGAATTCCCATCTTAATGGGAGGAAACACAGGGCTAGTTGTGAAGCTGCTTTGAAAGCAAAGAAGCAAGCTGCTCTGCAGAAGCTGAACATCTATCAGTCCAAAGAGGAGGTGAAACAGAAGGATGTTAGCAATAAGTTCAATTCCAATGTTAAGAGTGGAGATAATATTCTTAAGAAAGGATTAAAGGGAACAGTAGTGATGGATGATAAGGTGCAAAAGAACCAGGCTGAGCCTGTTAGGACGCATAATTCAAAATCAATATGTAGAGTCTGTGATGTTGTCCTTCTTAGTGAGGCCAATGTGGTCTCTCACATGAATGGGAAGAAGCATTTGGCTAAATTTAAGGACATTGGCATTGCTTGA 1482 0.4035 MASSWFLKLTFKCLYHFAWPLVALVYPMCASVQAIETDSYAETKDLISYWILLSLIYLFEYAFMNLLLWFQLWPYTKLMIIFWLIIPDFGRASYVYNKLSRFLKPHIVTWGLNNSWKKWFFEKDNFLMHAEIYMKENGTEALEKLIASKNTMCRPDAEATNEISATDDKEMLKTNGERLQTEQKDIQGLEAIEKKEIPATKQDIPVMLKIRPSQNASSVTVETKGTAESERAGGEVPRSSTQKEVQREWTCAICLVTTSREKDLISHLNGRKHRDTSEALISKKQPTRQKQKGAEATTNKTIATDNKKIPKDNPVMPKIASSQNASSATVETKGTAKSDKAGEEYLKSSTQKELQEEWPCALCSVTTSSKITLNSHLNGRKHRASCEAALKAKKQAALQKLNIYQSKEEVKQKDVSNKFNSNVKSGDNILKKGLKGTVVMDDKVQKNQAEPVRTHNSKSICRVCDVVLLSEANVVSHMNGKKHLAKFKDIGIA* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3139 493 Pfam TB2/DP1, HVA22 family 27 100 IPR004345 -
Mtr4g3139 493 Gene3D Classic Zinc Finger 444 490 - -
Mtr4g3139 493 SUPERFAMILY beta-beta-alpha zinc fingers 448 488 IPR036236 -
Mtr4g3139 493 PANTHER HVA22-LIKE PROTEINS 1 301 IPR004345 -
Mtr4g3139 493 PANTHER HVA22-LIKE PROTEINS 300 410 IPR004345 -
Mtr4g3139 493 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 300 410 - -
Mtr4g3139 493 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 301 - -
Mtr4g3139 493 MobiDBLite consensus disorder prediction 266 341 - -
Mtr4g3139 493 SUPERFAMILY beta-beta-alpha zinc fingers 237 284 IPR036236 -
Mtr4g3139 493 MobiDBLite consensus disorder prediction 317 334 - -
Mtr4g3139 493 SMART ZnF_U1_5 246 280 IPR003604 GO:0003676|GO:0008270
Mtr4g3139 493 SMART ZnF_U1_5 355 389 IPR003604 GO:0003676|GO:0008270
Mtr4g3139 493 SMART ZnF_U1_5 456 490 IPR003604 GO:0003676|GO:0008270
Mtr4g3139 493 SMART c2h2final6 459 483 IPR013087 -
Mtr4g3139 493 SMART c2h2final6 249 273 IPR013087 -
Mtr4g3139 493 SMART c2h2final6 358 382 IPR013087 -
Mtr4g3139 493 MobiDBLite consensus disorder prediction 214 244 - -
Mtr4g3139 493 Pfam Zinc-finger of C2H2 type 461 483 - -
Mtr4g3139 493 Pfam Zinc-finger of C2H2 type 360 382 - -
Mtr4g3139 493 Pfam Zinc-finger of C2H2 type 249 273 - -
Mtr4g3139 493 MobiDBLite consensus disorder prediction 282 304 - -
Mtr4g3139 493 Gene3D Classic Zinc Finger 231 278 - -
Mtr4g3139 493 Gene3D Classic Zinc Finger 335 388 - -
Mtr4g3139 493 MobiDBLite consensus disorder prediction 266 281 - -
Mtr4g3139 493 SUPERFAMILY beta-beta-alpha zinc fingers 343 389 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3139 Mtr-Chr4 44899549 44904151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3139 248 434 C2H2 Transcription Factor Family AT2G19380 22.581 1.74e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3139 - - mtr:MTR_4g093510 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3139 4 44899549 44904151 Mtr4g3139 4 44899549 44904151 ECH