Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3138 ATGTCGCAGCTTTCTATTCAACGAGCAAAGAAGTTAAAGTTTTTGATGCCTCAGATCTCTGCTTTCGGAAGCTCCCATTTCTCAACATCGCCTCAACCATCTTCTTCTGATCACAATAAGAGGGTTCCCAATCTTATTGGGGGAAGGTTTCTTGACTCTAAATCATCAAATTTCATAGATGTTTTAAACCCTGCGACACAAGAAGTTGTTTCACAAGTTCCATTGACTACTGATGAAGAGTTTAAAGCTGCTGTATCTGCAGCTAAGAAGGCATTTCCATCATGGCGTAACACTCCGGTTACGACGCGCCAACGTGTTATGTTGAAGCTCCAGGAGCTCATTCGCAGAGATATGGATAAACTTGCTCTTAATATAACCACCGAACAAGGAAAGACACTGAAGGATGCACAAGGAGATGTGTTTCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGAATGGGAACTCTACAAATGGGGGAGTATGTTTCAAATGTTTCACATGGAGTTGACACATACAGTGTCAGAGAACCAATTGGTGTTTGTGCTGGGATTTGTCCTTTCAACTTTCCTGCAATGATTCCATTGTGGATGTTTCCCGTGGCTGTTACCTGTGGCAATACATTTGTTCTAAAACCATCAGAGAAAGACCCAGGTGCTTCTATGATGCTTGCAGAATTGGCACTGGAAGCTGGTTTGCCTGAGGGTGTATTAAATGTTGTTCATGGAACCCATGATGTTGTGAATGCCATTTGTGACGATGACGATATCAAAGCCATATCATTTGTTGGTTCCAATGTTGCTGGAATGCACATATATTCAAGAGCAGCAGCTAAAGGGAAGCGTGTTCAGTCTAATATGGGGGCCAAAAATCATGCAATCGTCATGCCAGACGCAAATGTTGATGCTACTGTAAATGCTTTAGTTGCTGCTGGTTTTGGAGCTGCTGGGCAAAGGTGCATGGCTCTCAGCACAGTTGTTTTCGTGGGAGGTTCACAAGCATGGGCAACTAAAATCATAGAGCGTGCCAAAGCTCTTAAAGTAAACGCTGGAACGGAACCTGATGCAGATCTTGGTCCAGTTATCAGCAAACAGGCAAAGGAGCGAGTGCACAGATTAGTTCAATCCGGGGTCGAAAGTGGTGCCAGACTACTGCTTGATGGAAGAAATATAGTGGTCCCAGGATATGAATCTGGCAATTTTGTTGGCCCCACTATCTTATCAAATATCACTGCCGACATGGAGTGCTACAAGGAGGAAATTTTTGGCCCAGTTCTTCTTTTCATGGAGGCTGATAGCTTGGAAGATGCCATAAGCATTATCAACAAAAACAAGTATGGAAACGGCGCTTCTATATTTACTACTTCTGGTGTTGCTGCCAGGAAATTTCAGACTGAGATTGAGGCTGGGCAGGTTGGCATCAATGTTCCTATTCCAGTTCCTTTGCCATTTTTCTCATTTACAGGCAACAAGGCGTCATTTGCTGGTGATCTCAATTTCTACGGCAAAGCAGGGGTTAACTTTTATACACAGATCAAAACAATAACTCAGCAGTGGAAGGATTCAGTTGGTGGTAGCAAGATTAACATGGCAATGCCAACCTCTCAAAAATCTTGA 1614 0.4343 MSQLSIQRAKKLKFLMPQISAFGSSHFSTSPQPSSSDHNKRVPNLIGGRFLDSKSSNFIDVLNPATQEVVSQVPLTTDEEFKAAVSAAKKAFPSWRNTPVTTRQRVMLKLQELIRRDMDKLALNITTEQGKTLKDAQGDVFRGLEVVEHACGMGTLQMGEYVSNVSHGVDTYSVREPIGVCAGICPFNFPAMIPLWMFPVAVTCGNTFVLKPSEKDPGASMMLAELALEAGLPEGVLNVVHGTHDVVNAICDDDDIKAISFVGSNVAGMHIYSRAAAKGKRVQSNMGAKNHAIVMPDANVDATVNALVAAGFGAAGQRCMALSTVVFVGGSQAWATKIIERAKALKVNAGTEPDADLGPVISKQAKERVHRLVQSGVESGARLLLDGRNIVVPGYESGNFVGPTILSNITADMECYKEEIFGPVLLFMEADSLEDAISIINKNKYGNGASIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTITQQWKDSVGGSKINMAMPTSQKS* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3138 537 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 44 518 IPR010061 GO:0004491
Mtr4g3138 537 Pfam Aldehyde dehydrogenase family 52 514 IPR015590 GO:0016491
Mtr4g3138 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 24 537 IPR010061 GO:0004491
Mtr4g3138 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620
Mtr4g3138 537 SUPERFAMILY ALDH-like 38 519 IPR016161 GO:0016491
Mtr4g3138 537 CDD ALDH_F6_MMSDH 42 518 IPR010061 GO:0004491
Mtr4g3138 537 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE 24 537 - -
Mtr4g3138 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491
Mtr4g3138 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3138 Mtr-Chr4 44894244 44898930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3138 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 80.081 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3138 K00140 - gmx:100791508 942.184