Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3135 ATGGCATCATCTTGCTACAATCACAAACCTCATCTTCTTGCTTTCTTTCATGTTACATTAACATTCTTGCTTCTTGTAACATCTCGTGCAGCTCCATTATCATTCAACTATGAACAACTTGGTGGTGACAAAACAAATACCTTCAATATTTCAGGTGATGTCTCTCAAGACAACCAAGTCCTCCAACTCACAAAGTATAAGGAACACAGTCTAGGCAGAGTCACATATTCAAAATTGTTTCATCTTTGGGACATAAAAACAAGCGAAGTCACAGATTTCAATACTCGTTTCTCATTTACTATCAACACCCCCAACAAAACCCATCATGCAGATGGCATGACCTTCTATTTGGCACACCCCAATTTTCCCATGTCCCAAATATATGGAGGCGGAATCGGTCTTGCGAGCCTTGTTCAATTGAGTAATCCAGATTACACAAAAGAAAATCCATTTGTAGCTGTGGAATTTGATACATTTGTTAATGAATGGGATCCTAACTATGATCATGTTGGGATTGATGTTAATTCTATCAGCACTAATCACGCTACACAATGGTTCACTAGCATGGATGAAAGAGGATATGATGCTGAAGTCAGTTACGATTCAAGTTCAAACAATTTAACTGTCACATTTACAGGTTACCAACATAATAACACAATTCAACAACACCTGTTTTATGTTGTTAACCTGAGAGATGTTTTGCCTGATTGGGTTGAATTTGGATTCACTTCAGCAACAGGAACTTTTTGGGAGTATCATACTCTTAGCTCATGGTCATTCAACTCAAGTTTAGATTTTGAAGCAAAAGAAGATGGAACAAAAACAGGACTAGTTATAGGACTCGGTGTTGGTGGAGCTGTTGCTTTGATTTGTGTTATTGGGCTGGTTTGTCTTGTGAAATGGAAGCTGAAGAAGAAAGGCATGAAGGATGCTTTGCATTTTGATCTTGCAATGGATAGTGATTTTGAAAGAATCTCTCTACCTAAGAAATTTATATATGAAGAACTTGCTAGATCAACTAACAACTTTGCAAATGAACACAAAATTGGAGCTGGAGGTTTTGGAGCAGTGTACAAGGGATTTATAAGAGACTTGAAACATCATGTTGCAATTAAGAAGGTTTCTAAGGAATCAAATCAAGGAGTGAAGGAATATGCATCTGAAGTCAAAGTCATTAGCCAATTGAGGCATAAGAATTTGGTCCAACTCTATGGCTGGTGTCACAAGCAGAATGATCTGCTTTTAGTTTATGAGTTTGTGGAAAATGGAAGCTTAGATTCTTATATTTTCAAAGGAAAAGGTTTGCTGATATGGACAGTGAGATACAATATAGCTAGAGGTTTGGCCTCGGCATTATTGTACCTGCATGAAGAGTGTGAGCATTGTGTGCTACATAGAGACATAAAATCAAGCAATGTTATGTTGGATTCTAATTTCAATACAAAGCTTGGAGATTTCGGGCTGGCTAGACTAATGAACCATGAGACAGAATCAAAGACAACTGTTTTAGCAGGAACATATGGATATCTATCACCTGAAGCTGCTACAAGAGGAAAGGCTAGTAGAGAATCTGATGTATACAGTTTTGGAGTTGTTGCTTTGGAAATAGCTTGTGGTAGAAAGGCAATTGAACCAAGTCTTAGTGAAGAACATATTTACTTGGTGGATTGGGTTTGCGAACTATATGGTAATGGTGATCTTCTTAAAGCAGCTGATTCAAGATTATATGGTGAATTTAATGAGAAGGAAGTAGAGAGGTTAATGATAGTTGGACTTTGGTGTACTCATACAGATCATCTTCAGAGGCCTATGATTAGGCAAGTTGTTCAAGTGCTTAACTTTGATGCTCCATTACCTAATCTTCCATTACAGATGAATGCATCTACCTATAATACATCTTTCAATTCTGTGTATTCTAAATCTAAGATTTCTGGTTTTGAAAATAACCAAACTGGGACCTCAACTTCAAGTGATAGCACTATCACAGGGTCCTCACAATCAAGCACAGCCTTTGAAGTCGTATCTCCATCCGCTGCACTTCTACATAAATAA 2052 0.3748 MASSCYNHKPHLLAFFHVTLTFLLLVTSRAAPLSFNYEQLGGDKTNTFNISGDVSQDNQVLQLTKYKEHSLGRVTYSKLFHLWDIKTSEVTDFNTRFSFTINTPNKTHHADGMTFYLAHPNFPMSQIYGGGIGLASLVQLSNPDYTKENPFVAVEFDTFVNEWDPNYDHVGIDVNSISTNHATQWFTSMDERGYDAEVSYDSSSNNLTVTFTGYQHNNTIQQHLFYVVNLRDVLPDWVEFGFTSATGTFWEYHTLSSWSFNSSLDFEAKEDGTKTGLVIGLGVGGAVALICVIGLVCLVKWKLKKKGMKDALHFDLAMDSDFERISLPKKFIYEELARSTNNFANEHKIGAGGFGAVYKGFIRDLKHHVAIKKVSKESNQGVKEYASEVKVISQLRHKNLVQLYGWCHKQNDLLLVYEFVENGSLDSYIFKGKGLLIWTVRYNIARGLASALLYLHEECEHCVLHRDIKSSNVMLDSNFNTKLGDFGLARLMNHETESKTTVLAGTYGYLSPEAATRGKASRESDVYSFGVVALEIACGRKAIEPSLSEEHIYLVDWVCELYGNGDLLKAADSRLYGEFNEKEVERLMIVGLWCTHTDHLQRPMIRQVVQVLNFDAPLPNLPLQMNASTYNTSFNSVYSKSKISGFENNQTGTSTSSDSTITGSSQSSTAFEVVSPSAALLHK* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3135 683 CDD lectin_legume_LecRK_Arcelin_ConA 33 264 IPR001220 GO:0030246
Mtr4g3135 683 ProSitePatterns Protein kinases ATP-binding region signature. 349 373 IPR017441 GO:0005524
Mtr4g3135 683 Pfam Legume lectin domain 33 271 IPR001220 GO:0030246
Mtr4g3135 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 264 IPR013320 -
Mtr4g3135 683 ProSitePatterns Legume lectins beta-chain signature. 152 158 IPR019825 -
Mtr4g3135 683 CDD STKc_IRAK 349 613 - -
Mtr4g3135 683 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
Mtr4g3135 683 Gene3D Transferase(Phosphotransferase) domain 1 420 634 - -
Mtr4g3135 683 Gene3D - 31 277 - -
Mtr4g3135 683 PANTHER - 17 681 - -
Mtr4g3135 683 PANTHER LECTIN RECEPTOR KINASE 17 681 - -
Mtr4g3135 683 ProSiteProfiles Protein kinase domain profile. 343 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3135 683 SMART serkin_6 343 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3135 683 SUPERFAMILY Protein kinase-like (PK-like) 327 639 IPR011009 -
Mtr4g3135 683 Pfam Protein kinase domain 344 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3135 683 ProSitePatterns Legume lectins alpha-chain signature. 234 243 IPR000985 -
Mtr4g3135 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3135 Mtr-Chr4 44879320 44881901 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3135 18 630 Receptor kinase-like Gene Family AT5G10530 44.657 3.52e-166 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Mtr4g3135 Pkinase 4.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3135 - - mtr:MTR_4g093140 1298.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3135 4 44879320 44881901 Mtr4g3135 4 44879320 44881901 ECH