Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3128 ATGGGAAGAGGAAAGATTGTGATTCGAAGGATTGAGAATTTGACAAGCCGTCAAGTGACTTTCTCAAAGAGAAGAAAAGGGTTGATGAAGAAAGCTAAAGAACTATCCATTCTTTGTGATGCACAAGTTGGATTGATTTTGTTCTCCTCTACTCACAAGCTTTATGACTATGCAAGTTCAAGCATGCAGTCAGTCATCGAGCGCTATAACAAGTTAGTAGAGGACCATCATCAAGCAATGGATCCTACTTTGGAACTCAAGTTTTGGCAAAGAGAAGCAGCAAGCTTGAGGCAACAATTGCAGCACTTGAATGATAGCCAAAGGCAATTGATGGGCCAAGAACTATCTGGTTTAGATTTAAATGAGCTGCAGCATCTAGAAAGTCAATTGGAGATGAGTTTGAAAAGCATCCGCACGAGAAAGGGTCTAATTTTTAGTGATGAGATCAATGAATTACTCAAAAAGGGAAGCCTTAGTAGTCAAGAAAATGAAGATCTTCATAAGAAGATAGACCTCATTGGTGAGAAAAATGCAGAACTAGAGAAGGTTATTGGAGTAAGGCGTAGGGAATATGCAACATCCAATGCCTCACACAGTACTATCAGCTATGGACATGATATGCATGATGAATCAATCAGTCTCCAGCTGAGGCAGCCACAACCGCGACAGTGA 672 0.4062 MGRGKIVIRRIENLTSRQVTFSKRRKGLMKKAKELSILCDAQVGLILFSSTHKLYDYASSSMQSVIERYNKLVEDHHQAMDPTLELKFWQREAASLRQQLQHLNDSQRQLMGQELSGLDLNELQHLESQLEMSLKSIRTRKGLIFSDEINELLKKGSLSSQENEDLHKKIDLIGEKNAELEKVIGVRRREYATSNASHSTISYGHDMHDESISLQLRQPQPRQ* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3128 223 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr4g3128 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr4g3128 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr4g3128 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr4g3128 223 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mtr4g3128 223 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr4g3128 223 Gene3D - 14 109 IPR036879 GO:0003677|GO:0046983
Mtr4g3128 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 222 - -
Mtr4g3128 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr4g3128 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr4g3128 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr4g3128 223 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 222 - -
Mtr4g3128 223 Coils Coil 86 113 - -
Mtr4g3128 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr4g3128 223 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3128 Mtr-Chr4 44834856 44847383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3128 1 220 MADS-box Gene Family AT2G22630 51.786 1.85e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr4g3128 K-box 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3128 K09264 - tcc:18608170 279.256