Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3112 ATGGAGAATATCTCATTCATCAGAGGGTTTCCTGATCAGGAAATGATGGAGGATCCTTTACTTCTTCATCATCAGTGGCATTTGAGCTCTATCAATGAGTCTAACTCACTGCCAATAGGTTCTGCTTTTGGTGACACTTCACAACACCATTCATACGTTTATCCAAACTTCAACCCTAGAACTTCAATGGAAACTGCTCAGACACTAGAGACTCAATTTGTTTCGTACCCGAATCTTCTTTCGTTTGTCGATTTGAATCAGTTAAATCAGTTGGGACTAGTGAAGCCTAAGGATGAGATGATTGGTTCTCAAAACAACAATGCAACTTCTTCTGACATGATTTCTCAAGGAACCTTTGAGACCAAAAAGGTAGCAACACGTCCTAAACTCTCTCTTCCTCAAGACCATATAATAGCTGAAAGAAAGCGGCGTGAGAAGCTCAGCCAGCGCTTCATTGCTCTATCTGCCCTTGTTCCTGGACTACAAAAGATGGACAAAGTTACTGTTCTTGGAGATGCTATCAAGTACTTGAAGAAATTGCAAGAGAAGGTGAAGGTTCTTGAGGAGGAACAGAACATGAAGAAAAACGTGGAATTTGTGGTGGTTGTGAAGAAATATCAACTATCCAATGATGTTGAAAACTCTTCGGCAGAATCTGGTGATCCCTTTGACGAAGAACTACCAGAAATTGAAGCAAGATTTTGTGATAGAAATGTCCTCATAAGAGTTCATTGTGAGAAAATCAAAGGAGTTGTGGAAAAAACAATCCACAAAATTGAGAAACTCAATCTAAAAGTCACCAATAGCAGTTTCATGACATTTGGAAGTTGTGCACTTGATATAACAATTATTGCACAGATGGATGTGGAATTTTGCATGACAGTGAAGGATCTTGTGAGAAACCTACGCTCAGTTTTTACGTCTTTCATCTAA 933 0.3923 MENISFIRGFPDQEMMEDPLLLHHQWHLSSINESNSLPIGSAFGDTSQHHSYVYPNFNPRTSMETAQTLETQFVSYPNLLSFVDLNQLNQLGLVKPKDEMIGSQNNNATSSDMISQGTFETKKVATRPKLSLPQDHIIAERKRREKLSQRFIALSALVPGLQKMDKVTVLGDAIKYLKKLQEKVKVLEEEQNMKKNVEFVVVVKKYQLSNDVENSSAESGDPFDEELPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFGSCALDITIIAQMDVEFCMTVKDLVRNLRSVFTSFI* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3112 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Mtr4g3112 310 PANTHER BHLH TRANSCRIPTION FACTOR 68 309 - -
Mtr4g3112 310 PANTHER BHLH TRANSCRIPTION FACTOR 3 67 - -
Mtr4g3112 310 Gene3D - 133 202 IPR036638 GO:0046983
Mtr4g3112 310 Coils Coil 170 197 - -
Mtr4g3112 310 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 3 67 - -
Mtr4g3112 310 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 68 309 - -
Mtr4g3112 310 SMART finulus 137 186 IPR011598 GO:0046983
Mtr4g3112 310 CDD bHLH_AtNAI1_like 131 205 - -
Mtr4g3112 310 Pfam Helix-loop-helix DNA-binding domain 135 181 IPR011598 GO:0046983
Mtr4g3112 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 195 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3112 Mtr-Chr4 44687274 44689643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3112 134 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 56.667 1.50e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g3112 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3112 - - vun:114179595 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3112 4 44687274 44689643 Mtr4g3112 4 44687274 44689643 ECH
Mtr4g3112 4 44687274 44689643 Mtr2g0230 2 2384974 2387703 PCT