Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3100 ATGCATTCTGGCAACGTGATCTTTCTAGTAACGACTTCTACGGGAATGGCTTTTCAAATAAAAAAGGATATTCTATTACAAATACTCTTGTGCCTCACTATGTTAATGACTAGTCAGAGTACTGAGACTGATATCTTCTGTTTAAAATCCATTAAGAATTCCTTGGAAGATCCAAATGGTTACTTACAAAACTGGGACTTCAACAACAGAACAGAAGGTTTCATATGTAAATTTACTGGTGTTGAATGCTGGCATCCAGATGAAAATAGAGTACTAAATCTCAAACTATCTAACATGGGGTTGAAGGGTCAGTTTCCACGAGGACTTGAAAATTGCTCTTCGTTGACGGGCTTAGACCTTTCGGTCAATGACCTCTCAGGATCCATCCCATCTGATATTTCAACAATGCTCACATTTGTTACCAGCTTTGATCTCTCTAGTAACGAATTCACCGGTGAAATTCCGACAGCATTAGCAAACTGCACTTACCTGAATACTCTTAAACTTAGCCAAAATATGTTAAGCGGTGAAATTCCAAAACGACTTGGCACGCTTAACAGGCTTAAAGTGATTGATTTATCTAACAATCAATTCCATGGACAAGTGCCAGTGTTTAAAGGAGGAGTAGATGTTAACTATGCTAACAATAGAAGACTTTGTGGAGCGCCTTTGAAACATTGCTCATTGACACATGATAACGGCGATTTCCATCTATCATTCAAAAGTGGTCTTATTGTTGGTTACGTTTTTTCACTAATTTCTTCTGTTACATTCACTTGTATGTTCTACTCCAAATGTGCACATTGGGTGCATCAATCGAAAAAGAATCACCTAAACAAAGCCATAGAATTGGGCAAGCATATTATCTCCATCACCAGCAGCAGGACACAGATGGTAGCTGATCAGATGCACCAATTGTTACATTCGTGGATTGTACACAAAGAAACCAAAGAGATCTCTATACTAATGGAGAGACTAAATTCAACAATATGGTTGGAAGAACTGCGTGACGCAACCGATTGTTTTGCTGTGGACAATGCCATTGGGGTAGGAAAGATGGGAATGATGTACCAAGGATTTCTGCCTAATGGTCAATTACTAGCTGTTAAGAGACTATTCGACTCTCATTTGTTTAAAAGGCAGATCCTTTTAGAAACAACGATTATGAGTAGGTACAGACACAAAAATATAGTTCCCATGCTTGGGTTCTCCATTGAAGGAAAGGAACAGGTTTTGGCATATGCATACATGTCAAATGGGAGGCTTTCCAAATGGTTGCATCCTTTGGAAAGTGAAGTCATAAGATTGAAATGGCATGACAGGGTCAACATTGCATTTGGAATAGCAAGAGGGTTATCATGGCTGCATCATACATGCGATTTGGGCATAGTGCATTTTAGCATATGTTCAGAATGCATATTGCTAGATGAGAACTTTGAACCAAAAATATCCAATTTTGGAGAGGCCAAATTTATGAATCCCAACATTGAAGATCATCTTGGCATGATGTTTAAGGTGAACGACGGGAAGAAGGATGTCTACGACTTTGGAAGTGTGCTTTTTGAATTGATGACAGGGAAAACATATAATGAATTGTCGCGTTCATCTGACACTACTAATCTATGTGGTAACCCTTTGAGTTTTTATAATGTTATTGATAAATCTTTGACCGGGGAAGGACTTGAAAATGAAGTTTGTACTCTCATTAAGATTGCCTGTGAGTGTGTTCACCCTTTTCCAGACCAAAGGCCAACAATGCTTGAAGTTTACAACAATATGAGGAACGTTAGGAAGGGACCAAATGGTTCTGGTGATGATTCTGACACATTAAGGGGATTAGAATATGCTTCTTCTATTCCTATGGACGAAATTGTCGAGTTTTAA 1884 0.3854 MHSGNVIFLVTTSTGMAFQIKKDILLQILLCLTMLMTSQSTETDIFCLKSIKNSLEDPNGYLQNWDFNNRTEGFICKFTGVECWHPDENRVLNLKLSNMGLKGQFPRGLENCSSLTGLDLSVNDLSGSIPSDISTMLTFVTSFDLSSNEFTGEIPTALANCTYLNTLKLSQNMLSGEIPKRLGTLNRLKVIDLSNNQFHGQVPVFKGGVDVNYANNRRLCGAPLKHCSLTHDNGDFHLSFKSGLIVGYVFSLISSVTFTCMFYSKCAHWVHQSKKNHLNKAIELGKHIISITSSRTQMVADQMHQLLHSWIVHKETKEISILMERLNSTIWLEELRDATDCFAVDNAIGVGKMGMMYQGFLPNGQLLAVKRLFDSHLFKRQILLETTIMSRYRHKNIVPMLGFSIEGKEQVLAYAYMSNGRLSKWLHPLESEVIRLKWHDRVNIAFGIARGLSWLHHTCDLGIVHFSICSECILLDENFEPKISNFGEAKFMNPNIEDHLGMMFKVNDGKKDVYDFGSVLFELMTGKTYNELSRSSDTTNLCGNPLSFYNVIDKSLTGEGLENEVCTLIKIACECVHPFPDQRPTMLEVYNNMRNVRKGPNGSGDDSDTLRGLEYASSIPMDEIVEF* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3100 627 Gene3D Ribonuclease Inhibitor 42 228 IPR032675 -
Mtr4g3100 627 ProSiteProfiles Protein kinase domain profile. 342 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3100 627 Pfam Protein tyrosine and serine/threonine kinase 344 592 IPR001245 GO:0004672|GO:0006468
Mtr4g3100 627 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 22 596 - -
Mtr4g3100 627 SUPERFAMILY Protein kinase-like (PK-like) 323 591 IPR011009 -
Mtr4g3100 627 Gene3D Transferase(Phosphotransferase) domain 1 417 609 - -
Mtr4g3100 627 Pfam Leucine rich repeat N-terminal domain 43 84 IPR013210 -
Mtr4g3100 627 PANTHER RECEPTOR-LIKE PROTEIN 55 22 596 - -
Mtr4g3100 627 Gene3D Phosphorylase Kinase; domain 1 302 416 - -
Mtr4g3100 627 SUPERFAMILY L domain-like 40 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3100 Mtr-Chr4 44597094 44599800 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3100 28 608 Receptor kinase-like Gene Family AT3G28450 33.828 6.51e-102 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Mtr4g3100 PK_Tyr_Ser-Thr 3.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3100 - - mtr:MTR_4g092520 800.045