Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3078 ATGAATTCGCACGAGATGAGCAGAACTCTCTTAATTTTGGCAATAGGAATATGCATAGGCTTTATGGTTGGAGCTGGTTTGGTGTTTTCAGTTTTAGTCTTCTGCAGGTCTGGAAGGAAGCGTGTAGATGTGGAGAAGAGCGGTCCTCTGAGAACCGAGGCCATTAATGTTCATGGCAAAGGGGCTGATTCCAGTGTAACATCGTTATCAGACTCCAATGCGACTTTTGAGTCACCAAGAACATCGGAATGGAGTAACACATCTTTCTGGTTAGAAGGACTTAGGAGGAAAAATGCTGTCTCAGTATGCGGAATTCCCAAATATTCTTACAAAGATATAGAAAAGGCTACTTCTAATTTCACAACGATCATAGGCCATGGAGCATTCGGTCCTGTTTACAAAGCAATCATGCCTACAGGCGAGGCAGTTGCGGTTAAAGTTCTTGGTGCTAATTCAAGACAAGGGGAACAGGAATTTTTAACCGAGGTCCTATTACTTGGAAGATTACATCATAAGAATCTTGTGGGTTTGGTGGGATATGCAGCAGAAAGAGGACGACACATGCTTCTTTACATTTATATGATCAACGGTAGTCTTGCTTCTCATTTGTATGGCGAAAATCATGAGCCATTGAGCTGGAATATGAGACTTGGCATAGCACTAGACGTTGCAAGGGTGATGGAATATCTACATTATTCGGCCGATCCTCCTATTGTGCACCGTGACATCAAATCTTCCAACATTCTGTTGGACAAGTATATGAAAGCCAAGGTCACCGACTTTGGGCTTTCCAGACCAGAAATGATTAAACCTCGTCTGTCAAATGTCAGAGGAACTTTTGGATATCTTGATCCCGAGTATATCTCTACAAGAACATTCACTAAGAAAAGTGACGTTTATAGTTTTGGTGTGCTACTGTTTGAGCTTATTACCGGCAGGAATCCACAGCAGGGTCTCATGGAATATGTAAAACTAGCTGCCATGGAAAGTGAGGACAAGATTGCATGGGAAGAAATTGTAGATCCGCAACTGAATGGAAACTATGATGTGCATAAGCTTAATGACATGGCTTCACTTGCACTCAAATGCGTCAATGGAGTCTCCAAAACCCGACCTTCAATGAGGAACATTGTTCAAGCATTATCTCAACTTTATAAGAAGCCTAAGAGAAATTCTAGCCAAGCAGCTCCTTCTGCGTTAAATGAAGTGTCTATTGAAGTGGAGCAGCCAGAAACTCGTGACTTTTCTATTGAGTGCTCAGAGGAGCTGCGCAGATTGCACAGCCGATAA 1290 0.4248 MNSHEMSRTLLILAIGICIGFMVGAGLVFSVLVFCRSGRKRVDVEKSGPLRTEAINVHGKGADSSVTSLSDSNATFESPRTSEWSNTSFWLEGLRRKNAVSVCGIPKYSYKDIEKATSNFTTIIGHGAFGPVYKAIMPTGEAVAVKVLGANSRQGEQEFLTEVLLLGRLHHKNLVGLVGYAAERGRHMLLYIYMINGSLASHLYGENHEPLSWNMRLGIALDVARVMEYLHYSADPPIVHRDIKSSNILLDKYMKAKVTDFGLSRPEMIKPRLSNVRGTFGYLDPEYISTRTFTKKSDVYSFGVLLFELITGRNPQQGLMEYVKLAAMESEDKIAWEEIVDPQLNGNYDVHKLNDMASLALKCVNGVSKTRPSMRNIVQALSQLYKKPKRNSSQAAPSALNEVSIEVEQPETRDFSIECSEELRRLHSR* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3078 429 ProSiteProfiles Protein kinase domain profile. 118 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3078 429 PANTHER DUAL-SPECIFICITY KINASE DOMAIN PROTEIN 2 415 - -
Mtr4g3078 429 Gene3D Transferase(Phosphotransferase) domain 1 194 407 - -
Mtr4g3078 429 SMART serkin_6 118 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3078 429 Gene3D Phosphorylase Kinase; domain 1 78 193 - -
Mtr4g3078 429 Pfam Protein tyrosine and serine/threonine kinase 120 381 IPR001245 GO:0004672|GO:0006468
Mtr4g3078 429 CDD STKc_IRAK 124 384 - -
Mtr4g3078 429 PANTHER OS01G0253100 PROTEIN 2 415 IPR045271 GO:0004714|GO:0006468
Mtr4g3078 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Mtr4g3078 429 SUPERFAMILY Protein kinase-like (PK-like) 104 394 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3078 Mtr-Chr4 44466385 44470994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3078 104 381 Receptor kinase-like Gene Family AT3G19300 42.657 5.35e-74 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Mtr4g3078 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3078 - - gmx:100816549 591.267