Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3072 ATGGAACAAGAACATGATATCAGACTAAGTTTGTCTCTAGAAGATTTGGGTTTCAATGCTGAAAATGACAGCAATAAGAGAAAATCGAGCAAAAAGTACTATAATGAAGATGGCACAAAAGTGTTCCTATCAAAGAACGCTGGGTCAGAAAGAAAGAGGAAACAGAGACTCAATACCAAACTCTTCATGCTTTGGTCTTTAGTACCAATGGTCACAAATATGACCAAAGAAAGCATTTTCAACGATGCCATTACTTATATCAAGAAGCTTAAAGATGAAGTTAAGAGTCTCACGCAAGAGCTTCAAGCAATGGAACCAAAAGAAAAGTTTAAGGAAAGAGCTGAGCCAAAAATAGGTGATTTTCTTGCTGAAGAGGTTCAAGTGGAAAAAATGGATGGAAATAAGCTATGGGTTAAGATGATCTTTGAGAACAAGAGAGGAGGGTTCAAGAAATTAATGGAGACTATGAATGATTTAGGGCTTGAAATGATAGAAGCCAATGTAACAACCATAAAAGGAGCATATCTTATTACAACTTTCATAAAGGGAATGGGTGGTCAGCGACTTGATGTTCATCAAGTCAAACATTTGTTGCAAGATATAATCAAGATCATTTAG 618 0.3592 MEQEHDIRLSLSLEDLGFNAENDSNKRKSSKKYYNEDGTKVFLSKNAGSERKRKQRLNTKLFMLWSLVPMVTNMTKESIFNDAITYIKKLKDEVKSLTQELQAMEPKEKFKERAEPKIGDFLAEEVQVEKMDGNKLWVKMIFENKRGGFKKLMETMNDLGLEMIEANVTTIKGAYLITTFIKGMGGQRLDVHQVKHLLQDIIKII* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3072 205 Gene3D - 43 107 IPR036638 GO:0046983
Mtr4g3072 205 SMART finulus 47 96 IPR011598 GO:0046983
Mtr4g3072 205 Coils Coil 80 107 - -
Mtr4g3072 205 PANTHER TRANSCRIPTION FACTOR DYT1 11 205 - -
Mtr4g3072 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 106 IPR036638 GO:0046983
Mtr4g3072 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 90 IPR011598 GO:0046983
Mtr4g3072 205 Pfam Helix-loop-helix DNA-binding domain 49 90 IPR011598 GO:0046983
Mtr4g3072 205 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 11 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3072 Mtr-Chr4 44415911 44417411 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3072 25 203 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 37.436 1.26e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g3072 HLH 1.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3072 - - mtr:MTR_4g091910 187.578