Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3068 ATGGAACAAGTAAATAACAATAGACTATGTGTGTCTATGGAAGAGTTAGGTTTCAATGCTGAAAATGGTAGCAATAGGGGAAACTGGAGAAAGAACAAGCACCGTGATAATGATGGTGTCCCAAAAGTGTTCACATCCAAGAACCTTGAGACAGAAAGAAAGAGAAGGGAGAAACTCACTAGCAGACTTTTGGTGCTTAGGTCTTTAGTACCAATCATCACAAATATGAACAAAGCAAGCATTATTGAGGATGCTATCACTTATACCATGAAGTTGCAACATGAAGTTGAGAGTCTCACACTAGAGCTTGATGGAATGGAACCAAGAAGAGAGAAAAGAGCTGAGCCAAAACAAAGAGAGTTTTCTTCTGTTGATGAGATGAATAAAATGGGGTTGCAGGAAGAGGTGCAGGTAGCAAAAGTTGATGGGAATAAGCTATGGATTAAGTTGCTCATTGAGAAGAAAAGAGGAAGGTTCAACAAATTAATACAAGACTTGAATGATTTGAACATTGAAATGGTAGATCTCAGTGTTACAACTATGGCAGGAGCATATCTCATTACAGCCTCCTTACAGGACATGAGTGGTGAACCACTTGAACTTTATCGAATTCCAACTATTATCAAGTATTAG 633 0.3839 MEQVNNNRLCVSMEELGFNAENGSNRGNWRKNKHRDNDGVPKVFTSKNLETERKRREKLTSRLLVLRSLVPIITNMNKASIIEDAITYTMKLQHEVESLTLELDGMEPRREKRAEPKQREFSSVDEMNKMGLQEEVQVAKVDGNKLWIKLLIEKKRGRFNKLIQDLNDLNIEMVDLSVTTMAGAYLITASLQDMSGEPLELYRIPTIIKY* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3068 210 PANTHER TRANSCRIPTION FACTOR DYT1 9 205 - -
Mtr4g3068 210 Coils Coil 152 172 - -
Mtr4g3068 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 92 IPR011598 GO:0046983
Mtr4g3068 210 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 9 205 - -
Mtr4g3068 210 MobiDBLite consensus disorder prediction 27 42 - -
Mtr4g3068 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 107 IPR036638 GO:0046983
Mtr4g3068 210 SMART finulus 49 98 IPR011598 GO:0046983
Mtr4g3068 210 MobiDBLite consensus disorder prediction 21 42 - -
Mtr4g3068 210 Pfam Helix-loop-helix DNA-binding domain 49 93 IPR011598 GO:0046983
Mtr4g3068 210 Gene3D - 45 120 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3068 Mtr-Chr4 44386853 44388592 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3068 24 192 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 42.458 4.04e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g3068 HLH 5.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3068 - - mtr:MTR_4g091910 404.06