Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3065 ATGGCGACCAATCTCCCAGAACACTTCAAATGTCCAATCTCACTCGAAATAATGTCCGACCCAGTCATCCTCTCTTCCGGTCACACATTCGATCGTCCTTCAATCCAACGTTGGCTTGACGAAGGTCATCGTACTTGTCCAATTACCAAACTACCCCTTCCTGATTCTCCTATCCTCATCCCGAACCACGCGCTTCGTAGTTTAATCTCTAGTTACACACTCCTTCCACCACTTCATCAAATCATTTCACAACCCGAAACCCTAATTTCAACCCTAATTTTGAATTCTTCTTCTTCCGATTCCAAAATTGACTCGCTTCGTCAACTCGCTCGTCTTTCTAAACGTGATGCCAGTTTCCGTCGTCGTCTTGTTGATTCCGGTGCCGTCTCTGCTGTGCTTTTCTGTCTTGATTCCTCTTCCTCTTCTTCTTCCTCCGGTAACGTTAAGTTGCAGGAGAAGGCTTTGTCTCTTCTTCTTAATCTTAGTCTTGATGATGATAGCAAAATTGGTCTTGTTGCAGAAGGAGCAATTGACCGGGTTGTGAATTTTCTAGTCGGAGCAGCTACGTCGGATTGTCGTGCTTTGGCGGCGACGATAATCACGAGTCTTGCTGTTGTGGAGGTGAATAAAGCAACAATCGGAGCTTTTCCTGGCGCAATTGAAGCTCTGGTGATGATTCTACGCGACGGGAAGGGGAGAGAGAAGAAGGAAGCTGCGACGGCACTATACGCGCTTTGTTGTTTTAGGGATAATCGAAAAAGAGCGGTGGATTGCGGCGCGGTGCCGATTTTGTTAAGAAATGTTGAAAGTGGACTTGAGAGGGGTGTTGAGGTGATTGGTGTTTTGGCGAAATGCAAGGAAGGGAGGGAGCAATTGGAGAGTTATGGTGGTTGTGCGAAGATTTTGGTGAGTGTTTTGAGGAATGGAAGTTCAAGAGGGATTCAATATGCATTGTTGGCACTTACTTTGGTTTGTTTGCATAGCAAGGAAATACTTATGATGACTCTGCAAGAAGGGGTTTTGGAAATTTGTATTGGGATGGTAGAGGATAATAGTGAGAAAGTTAGGAGAAATGCGTCTAATTTGATTCGGGTTCTTCGCGGAGGAAACCACCACAGGATCAGTTGA 1128 0.4548 MATNLPEHFKCPISLEIMSDPVILSSGHTFDRPSIQRWLDEGHRTCPITKLPLPDSPILIPNHALRSLISSYTLLPPLHQIISQPETLISTLILNSSSSDSKIDSLRQLARLSKRDASFRRRLVDSGAVSAVLFCLDSSSSSSSSGNVKLQEKALSLLLNLSLDDDSKIGLVAEGAIDRVVNFLVGAATSDCRALAATIITSLAVVEVNKATIGAFPGAIEALVMILRDGKGREKKEAATALYALCCFRDNRKRAVDCGAVPILLRNVESGLERGVEVIGVLAKCKEGREQLESYGGCAKILVSVLRNGSSRGIQYALLALTLVCLHSKEILMMTLQEGVLEICIGMVEDNSEKVRRNASNLIRVLRGGNHHRIS* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3065 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Mtr4g3065 375 SUPERFAMILY ARM repeat 96 366 IPR016024 -
Mtr4g3065 375 Gene3D - 84 365 IPR011989 -
Mtr4g3065 375 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Mtr4g3065 375 PANTHER U BOX DOMAIN-CONTAINING 1 367 - -
Mtr4g3065 375 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Mtr4g3065 375 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 367 - -
Mtr4g3065 375 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Mtr4g3065 375 CDD RING-Ubox_PUB 9 50 IPR045210 -
Mtr4g3065 375 SUPERFAMILY RING/U-box 3 73 - -
Mtr4g3065 375 SMART arm_5 285 326 IPR000225 GO:0005515
Mtr4g3065 375 SMART arm_5 116 163 IPR000225 GO:0005515
Mtr4g3065 375 SMART arm_5 164 205 IPR000225 GO:0005515
Mtr4g3065 375 SMART arm_5 328 368 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3065 Mtr-Chr4 44368654 44370339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3065 1 368 U-box Gene Family AT4G21350 58.090 4.10e-140 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3065 - - gmx:100785141 497.664