Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3062 ATGGACTCTGCTAAAAATCTTCTCTACCTTAGCACAGTCGAAAATCATAAAAACAAATTGTTAGTGTTAGATTACTCTTTGATTCTACTATGTCTCACCTTATCTTTTTGCCCTTGTTCTTCTGATACCATAACTATTCACAAACCCATAAGAGATGGTGAACTTCTCATTTCTAAATCTAAAACATTTGCTCTTGGATTCTTCACTCCAGGAAAGTCCACCTCTCGCTATGTTGGAATTTGGTACCACGATTTGCAACCCCAAACTGTTGTCTGGGTTGCAAACAGGGATGCTCCCATCAATGACACTTCTGGAATTCTATCAATCGACCCAAATGGGAATCTAGAACTCCACCACAAACTTAGCACCATTCCCATTTGGTCTACCAATGTTTCATTAACACAATCACAAAGAAATAACACCAATGTTATAGCTCAACTATTGGATATAGGAAACCTTGTTCTGAGGTTAAACGACACCGAAACTGCCATCTGGGAAAGCTTGGATCATCCCACAGACACAATGCTTCCATATATAAAGCTTGGTTTTGATAGAAAAATTAATCAAAGTTGGTTCCTTCAATCATGGAAGACCGACGATGACCCTGGAAAAGGTGCGTTCACCGTGAAATTCAGCACAATTGGCAAACCGCAGTTGTTTATGTACAACCGTGATGTTCGTTTCTGGCGTGGTGGACATTGGAACGGAGAAATATTAGTAGGTCTACCTAATATGAAACGAGATATGGCCGTTCGTAACGTTTCTTTCGTTGAAGATGACAACTATGTAGCACTCTCATATAACATGTTTAATAAGTATGTCATTACTAGGGTAGTGGTTCAGCAATCTGGTTTCTTTCAAACATTCACGTGGGACAGTCAAAAGAGCCAATGGAGCCGGTACTGGTCTGAACCAACAGACCAATGTGCTAACTACGGAACATGTGGATCAAATAGTAATTGTGACCCTTTGAACTTTGAGAACTTTAAGTGTACTTGTTTACTTGGTTTCGAACCAAAATTTCCACGAGATTGGTATGAGAGTCGAGATGGGTCAGGTGGATGTGTAAGAAAGAAAGGTGCATCTGTTTGTGGAAATGGAGAAGGGTTTATCAAAGTTGTAAGCGTAAAAGTTCCTGAAACGTCTACGGCAGTTGCCATAGATGGTTTGAATTTGGATGAATGTGAGAAAGAATGCTTGAGAAACTGCTCTTGTACTGCCTATGCAGTTGCTGACGTGAAGAATGGTGGAAGTGGATGTTTGGCATGGCATGGGGATTTAATGGACATTCAAAAACTTAGTGATCAAGGCCAAGATTTATTTTTACGCGTCGCTAAAGTTGAACTAGCGTCAGCTAACTACGACAAAAAAAGCAAAGGAGTCCTTGGCAAAAAGAGGTTAGCTGCAATTCTTGTAGCTTCTATAGTTGCAATTGTCATCCTCCTCTTCTGTGTGAATTACATGTGGAAGAAAAAGAGAAAGGATAAAATGATGCCGCAACCAAACCAAGATTCCTCTGGGGAAGAGAATGATACCCAAAGCAACACACATCCAAATCTACCCTTTTTCAGCTTTAAAACGATAATGACAGCTACAAGAAATTGTGGTCATGAGAATAAGCTTGGACAAGGTGGATTTGGTTCTGTCTATAAGGGTTGCTTGGTTAGTGGACAAGAGATAGCAGTGAAAAGATTGTCCAGAGATTCAGGTCAAGGCAAAGAAGAGTTTAAGAATGAAATTAAACTTTTAGTTAAACTCCAACACAGAAATCTAGTGAGGTTGCTCGGTTGTTGCTTTGAAAAAGAAGAAAGGATGCTAGTTTATGAATATCTACCAAACAAAAGCCTAGACTTCTTTATATTTGATCAAAACCAAAGGTCGTCATTGGATTGGGTAAAGCGTTTTGAAATTATTTGTGGGATTGCTCGAGGTGTTTTATATCTTCATCAAGATTCAAGGCTGAAAATAATTCATAGAGATCTAAAAGCCAGCAACGTTCTCCTCGATGCTGCAATGAATCCCAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATGAAATTCAAGCAAGAACAAAAAGAGTGGTCGGAACATACGGATATATGTCACCAGAATATGCAATGGAAGGACGATATTCAACGAAATCTGATGTCTTCAGTTATGGGGTCATACTACTGGAGACTATTGCTGGCCAAAGAAACACACATTGTGAAAAAGGAAGAGAATCCCCAAATTTAATTGGACATGTGTGGAGACTATGGACAGAAGGAAGAGCCTTGGATATAGTTGATCCAGAACTAAACCAGTTTTATCCTCCTACTACAGTTATGAGATGCATTCAAATTGGACTTCTGTGTGTGCAAGAAAATGCCATGAATAGACCATCAATGTTAGAAGTTGTTTTCATGCTAGCCAATGAAACACCTCTTTGCCCACCTCTAAAACCAGCATTTTTCTTCAATGGAAACCAAGATTTGCAAGAGTCGCCAACTTCAGGAGAAGGGCCTTCAATAAATGAACTAACAGAAACTACCATCAGTGCTCGCTGA 2556 0.3944 MDSAKNLLYLSTVENHKNKLLVLDYSLILLCLTLSFCPCSSDTITIHKPIRDGELLISKSKTFALGFFTPGKSTSRYVGIWYHDLQPQTVVWVANRDAPINDTSGILSIDPNGNLELHHKLSTIPIWSTNVSLTQSQRNNTNVIAQLLDIGNLVLRLNDTETAIWESLDHPTDTMLPYIKLGFDRKINQSWFLQSWKTDDDPGKGAFTVKFSTIGKPQLFMYNRDVRFWRGGHWNGEILVGLPNMKRDMAVRNVSFVEDDNYVALSYNMFNKYVITRVVVQQSGFFQTFTWDSQKSQWSRYWSEPTDQCANYGTCGSNSNCDPLNFENFKCTCLLGFEPKFPRDWYESRDGSGGCVRKKGASVCGNGEGFIKVVSVKVPETSTAVAIDGLNLDECEKECLRNCSCTAYAVADVKNGGSGCLAWHGDLMDIQKLSDQGQDLFLRVAKVELASANYDKKSKGVLGKKRLAAILVASIVAIVILLFCVNYMWKKKRKDKMMPQPNQDSSGEENDTQSNTHPNLPFFSFKTIMTATRNCGHENKLGQGGFGSVYKGCLVSGQEIAVKRLSRDSGQGKEEFKNEIKLLVKLQHRNLVRLLGCCFEKEERMLVYEYLPNKSLDFFIFDQNQRSSLDWVKRFEIICGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDEIQARTKRVVGTYGYMSPEYAMEGRYSTKSDVFSYGVILLETIAGQRNTHCEKGRESPNLIGHVWRLWTEGRALDIVDPELNQFYPPTTVMRCIQIGLLCVQENAMNRPSMLEVVFMLANETPLCPPLKPAFFFNGNQDLQESPTSGEGPSINELTETTISAR* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3062 851 SMART ntp_6 365 444 IPR003609 -
Mtr4g3062 851 CDD B_lectin 49 171 IPR001480 -
Mtr4g3062 851 PANTHER GLYCOPROTEIN S13, PUTATIVE-RELATED 27 847 - -
Mtr4g3062 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 656 668 IPR008271 GO:0004672|GO:0006468
Mtr4g3062 851 Pfam PAN-like domain 364 430 IPR003609 -
Mtr4g3062 851 Gene3D - 35 168 IPR036426 -
Mtr4g3062 851 SMART blect_4 47 171 IPR001480 -
Mtr4g3062 851 Pfam S-locus glycoprotein domain 229 341 IPR000858 GO:0048544
Mtr4g3062 851 PANTHER - 27 847 - -
Mtr4g3062 851 ProSiteProfiles PAN/Apple domain profile. 364 445 IPR003609 -
Mtr4g3062 851 Gene3D Phosphorylase Kinase; domain 1 509 610 - -
Mtr4g3062 851 CDD PAN_AP_plant 365 445 - -
Mtr4g3062 851 SUPERFAMILY Protein kinase-like (PK-like) 516 820 IPR011009 -
Mtr4g3062 851 PIRSF SRK 15 851 IPR024171 GO:0004674
Mtr4g3062 851 Gene3D Transferase(Phosphotransferase) domain 1 611 811 - -
Mtr4g3062 851 MobiDBLite consensus disorder prediction 500 516 - -
Mtr4g3062 851 MobiDBLite consensus disorder prediction 496 516 - -
Mtr4g3062 851 Gene3D Hepatocyte Growth Factor 362 442 - -
Mtr4g3062 851 Pfam D-mannose binding lectin 89 197 IPR001480 -
Mtr4g3062 851 ProSitePatterns Protein kinases ATP-binding region signature. 541 563 IPR017441 GO:0005524
Mtr4g3062 851 Pfam Protein tyrosine and serine/threonine kinase 538 803 IPR001245 GO:0004672|GO:0006468
Mtr4g3062 851 SUPERFAMILY alpha-D-mannose-specific plant lectins 90 202 IPR036426 -
Mtr4g3062 851 CDD STKc_IRAK 541 806 - -
Mtr4g3062 851 ProSiteProfiles Bulb-type lectin domain profile. 41 168 IPR001480 -
Mtr4g3062 851 ProSiteProfiles EGF-like domain profile. 305 343 IPR000742 -
Mtr4g3062 851 SMART serkin_6 538 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3062 851 ProSiteProfiles Protein kinase domain profile. 535 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3062 851 MobiDBLite consensus disorder prediction 824 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3062 Mtr-Chr4 44345342 44350978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3062 523 829 Receptor kinase-like Gene Family AT3G45860 57.742 9.72e-121 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr4g3062 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3062 - - mtr:MTR_4g091840 1726.45