Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3051 ATGCAAATCTTCGTTAAGACCCTCACTGGAAAGACCATCACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAGGCAAAGATTCAAGACAAGGAAGGAATCCCACCTGACCAGCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGATGGGCGTACCCTTGCTGATTATAACATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATATTTGTGAAGACTCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTTAAGGCCAAGATACAGGACAAAGAAGGTATTCCACCAGACCAGCAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCAGAACCTTGGCTGACTACAACATCCAGAAGGAGTCAACTCTCCATCTTGTGTTGCGACTTCGCGGTGGTATGCAGATTTTTGTAAAGACCCTTACAGGAAAGACAATTACTTTGGAGGTAGAGAGCTCAGATACGATTGACAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCCCCAGATCAGCAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACTCTTGCTGATTACAACATCCAGAAAGAGTCAACTCTTCACCTTGTCTTGCGTCTTCGTGGTGGTATGCAGATTTTTGTGAAGACTCTTACTGGCAAGACAATTACTTTGGAGGTAGAGAGCTCGGACACAATTGACAATGTGAAGGCCAAGATACAAGACAAGGAGGGTATTCCCCCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAACTTGAAGACGGTCGAACTCTGGCTGATTATAATATCCAGAAAGAGTCGACTCTTCATCTTGTCTTGCGGCTTCGTGGTGGTATGCAGATTTTTGTTAAGACCCTAACTGGAAAAACGATTACTTTGGAGGTTGAGAGCTCAGACACAATTGACAATGTAAAGGCTAAGATTCTGGACAAGGAGGGCATTCCTCCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACCTTGTCAGATTATAACATCCAGAAGGAATCAACCCTTCATCTTGTCCTTCGTCTGAGGGGAGGCATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATTACATTGGAGGTGGAAAGCTCTGACACCATTGATAATGTTAAGGCTAAAATACAGGATAAGGAGGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTTGAAGATGGCCGGACTTTGGCTGATTATAACATTCAGAAAGAGTCCACCCTTCACCTTGTCCTTCGTCTGAGGGGAGGTATGCAGATCTTTGTGAAGACATTGACCGGAAAGACCATCACCTTAGAGGTGGAAAGTTCAGACACTATCGATAATGTCAAGGCAAAAATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTTTTGCGTCTTCGTGGTGGATTTTAA 1602 0.4544 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKILDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3051 533 PRINTS Ubiquitin signature 11 31 IPR019956 -
Mtr4g3051 533 PRINTS Ubiquitin signature 32 52 IPR019956 -
Mtr4g3051 533 PRINTS Ubiquitin signature 53 74 IPR019956 -
Mtr4g3051 533 SUPERFAMILY Ubiquitin-like 304 380 IPR029071 -
Mtr4g3051 533 SUPERFAMILY Ubiquitin-like 380 456 IPR029071 -
Mtr4g3051 533 Gene3D - 305 380 - -
Mtr4g3051 533 Gene3D - 1 76 - -
Mtr4g3051 533 Gene3D - 381 456 - -
Mtr4g3051 533 Gene3D - 153 229 - -
Mtr4g3051 533 Gene3D - 230 304 - -
Mtr4g3051 533 Gene3D - 77 152 - -
Mtr4g3051 533 Gene3D - 457 533 - -
Mtr4g3051 533 CDD Ubl_ubiquitin 457 532 - -
Mtr4g3051 533 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Mtr4g3051 533 CDD Ubl_ubiquitin 77 152 - -
Mtr4g3051 533 ProSiteProfiles Ubiquitin domain profile. 457 532 IPR000626 GO:0005515
Mtr4g3051 533 PANTHER UBIQUITIN 13 152 359 - -
Mtr4g3051 533 PANTHER UBIQUITIN 13 303 510 - -
Mtr4g3051 533 PANTHER UBIQUITIN 13 1 207 - -
Mtr4g3051 533 PANTHER UBIQUITIN 13 77 282 - -
Mtr4g3051 533 PANTHER UBIQUITIN 13 208 435 - -
Mtr4g3051 533 PANTHER UBIQUITIN 13 456 532 - -
Mtr4g3051 533 ProSiteProfiles Ubiquitin domain profile. 305 380 IPR000626 GO:0005515
Mtr4g3051 533 ProSiteProfiles Ubiquitin domain profile. 381 456 IPR000626 GO:0005515
Mtr4g3051 533 ProSitePatterns Ubiquitin domain signature. 407 432 IPR019954 -
Mtr4g3051 533 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Mtr4g3051 533 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Mtr4g3051 533 SUPERFAMILY Ubiquitin-like 228 304 IPR029071 -
Mtr4g3051 533 CDD Ubl_ubiquitin 229 304 - -
Mtr4g3051 533 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Mtr4g3051 533 Pfam Ubiquitin family 383 454 IPR000626 GO:0005515
Mtr4g3051 533 Pfam Ubiquitin family 307 378 IPR000626 GO:0005515
Mtr4g3051 533 Pfam Ubiquitin family 231 302 IPR000626 GO:0005515
Mtr4g3051 533 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Mtr4g3051 533 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Mtr4g3051 533 Pfam Ubiquitin family 459 530 IPR000626 GO:0005515
Mtr4g3051 533 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Mtr4g3051 533 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Mtr4g3051 533 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Mtr4g3051 533 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Mtr4g3051 533 CDD Ubl_ubiquitin 381 456 - -
Mtr4g3051 533 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Mtr4g3051 533 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Mtr4g3051 533 ProSitePatterns Ubiquitin domain signature. 331 356 IPR019954 -
Mtr4g3051 533 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Mtr4g3051 533 SMART ubq_7 77 148 IPR000626 GO:0005515
Mtr4g3051 533 SMART ubq_7 457 528 IPR000626 GO:0005515
Mtr4g3051 533 SMART ubq_7 153 224 IPR000626 GO:0005515
Mtr4g3051 533 SMART ubq_7 381 452 IPR000626 GO:0005515
Mtr4g3051 533 SMART ubq_7 305 376 IPR000626 GO:0005515
Mtr4g3051 533 SMART ubq_7 1 72 IPR000626 GO:0005515
Mtr4g3051 533 SMART ubq_7 229 300 IPR000626 GO:0005515
Mtr4g3051 533 SUPERFAMILY Ubiquitin-like 456 532 IPR029071 -
Mtr4g3051 533 CDD Ubl_ubiquitin 1 76 - -
Mtr4g3051 533 CDD Ubl_ubiquitin 153 228 - -
Mtr4g3051 533 PANTHER UBIQUITIN 152 359 - -
Mtr4g3051 533 PANTHER UBIQUITIN 1 207 - -
Mtr4g3051 533 PANTHER UBIQUITIN 77 282 - -
Mtr4g3051 533 PANTHER UBIQUITIN 456 532 - -
Mtr4g3051 533 PANTHER UBIQUITIN 303 510 - -
Mtr4g3051 533 PANTHER UBIQUITIN 208 435 - -
Mtr4g3051 533 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Mtr4g3051 533 CDD Ubl_ubiquitin 305 380 - -
Mtr4g3051 533 ProSitePatterns Ubiquitin domain signature. 483 508 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3051 Mtr-Chr4 44233000 44235622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3051 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 2.38e-46 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3051 K08770 - cit:102627936 1025