Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3050 ATGAGCATGATCATAGGATACAACAAAGTTTCATTCTTCATGTTGTTGTCTTTCTTCTCTTTTCTCTGTTTTTATCCTCTGTTTTTGCATGCAGCAAACTTTATCACACAGAACCAAACTATCAAAGATGGTTCCACTTTGGTCTCAGAAGGTCTCAGATTTGAAATGGGTTTCTTCAGTTTTAACAACTCTTCTTCAAGATACGTTGGAATTTGGTATTACAACGTTACTTCAGCGTATGTTTGGGTTGCAAATAGAGAAAAACCAATCAAAAACAGAGAAGGTTTTATCACAATAAAAAATGATGGTAACTTAGTTGTTCTTGATGGACAAAACAACGAGGTTTGGTCAAGCAACGCATCGAAGATTTCGATAAATAATTCACAAGCTGTTCTTCATAATAATGGAAACCTTATTCTTTCAGATAGAGAAAATAACAAAGAGATTTGGCAAAGTTTTGAAGATCCAACTGATACATATCTTCCAGGTATGAAAGCTCCGGTGAGCGGTGGAAATGGAATTGGGAAGGATGCAACTTTTTGTTCATGGAAATCAGAGAATGATCCTTCATTAGGAAACTATACAATGAGTGTTGATTCTGAAGCATCGCCGCAGATAGTGATTATGGAAGGAGAGAAAAGAAGGTGGAGAAGTGGTTATTGGGATGGTAGAGTTTTCACAGGTGTACCAAATATGACAGGAAGTTATCTTTTTGGTTTTAGGCTTAATACAAATGATACTGGAGAAAGGTATTTTGTATATGAAGCATTGGAAAATAGTGATAAGGTAAGGTTCCAACTTGGATATGATGGATATGAGAGACAATTCAGGTGGAATGAAGAAGAGAAAGAATGGAATGTGATACTAAGTGAGCCTAATAAGAAGTGTGAGTTTTATAATTCATGTGGTAGTTTTGCAATATGTGATATGTCTGATTCAAGTTTGTGCAAATGCATAAAAGGGTTTGAACCAAGGGATGTGAAAAGTTGGAATAGTGGGAATTGGTCAAAAGGGTGTAAGAGGATGACTCCATTGAAGAGTGAGAGAGGTGGTAATAGTTCTGGTGGAGATGATGGTTTTTTGGTGCAAAAGGGTTTGAAGTTACCTGATTTTGCACGTTTGGTGAGTGCTGTTGATAGTAAGGATTGTGAAGGAAATTGTCTGAAGAATAGTTCTTGTACTGCCTATGTAAATGCTATTGGAATTGGGTGTATGGTTTGGCATGGGGAGTTAGTTGATTTTCAAAGGTTAGAAAATCAAGGAAATACACTCAACATTCGTCTTGCTGATTCTGATTTAGGTGATGGGAAGAAAAAGACCAAAATTGGGATAATATTAGGTGTTGTCGCGGGGATTATCTGCCTTGGAATCTTTGTATGGCTTCTATGTAGGTTTAAGGGAAAACTCAAAGTTTCCTCAACTTCTTCTACTTCCAACATTAATGGTGATGTACCAGTTTCTAAACCAACCAAGAGTGGAAACTTATCAGCAGGATTTTCAGGATCAATTGATCTTCACTTAGACGGGAGCTCTATAAATAATGCAGAACTTTCACTCTTCAATTTTAGTAGCATTATAATTGCAACAAACAATTTCTCAGAAGAAAACAAGCTTGGACAAGGGGGATTTGGTCCTGTCTACAAGGGAAGGCTTCCAGGGGGAGAACAAATCGCGGTCAAGAGGCTTTCTAGATTGTCGAACCAAGGTTTAGACGAGTTCAAGAATGAAATGATGCTAATAGCTAAATTACAACATAGAAATCTTGTTAGACTATTGGGATGTTCAATTCAAGGGGAAGAAAAGTTACTTGTATATGAATACATGCCAAACAAAAGTTTGGACTACTTCTTATTTGATCCAGTCAAGAAAACAAAACTAGACAGCTCAAGACGGTATGAAATCATCGAGGGCATTGCAAGAGGACTACTTTATCTGCACCGAGATTCACGTCTTAGAATAATCCATCGAGATCTAAAAGCAAGCAACATTTTGTTGGATGAAAATATGAATCCAAAAATTTCAGACTTTGGCTTGGCAAAGATATTTGGGGGAAATCAAAATGAAGGGAATACAGAGAGAGTAGTTGGAACATATGGATATATGTCTCCAGAATACGCAATGGAGGGTCTATTTTCAGTCAAATCTGATGTATATAGTTTTGGCGTACTTCTACTAGAGATTGTGAGTGGCCGCAAAAACACTAGCTTTCGTGATTCGTATGATCCAAGTCTCATAGGATATGCGTGGCGTCTATGGAATGAAGAGAAAATAATGGAGCTTGTCGATCCGTCCATAAGTGATTCAACTAAAAAGAGTAAAGCTTTGAGATGCATCCACATAGGGATGTTATGTGTGCAAGATTCAGCATCTCATAGACCAAACATGTCCTCAGTGGTGTTGATGCTTGAAAGTGAAGCAACAACTCTTCCCTTGCCGGTCAAACCTTTGCTCACTTCCATGAGGAGATATGATGATACAGAAGAATTTAATACTGAACCTTTTGATGCCTCAGTTGATCTGACTGTCACAGGGAGATAG 2538 0.3767 MSMIIGYNKVSFFMLLSFFSFLCFYPLFLHAANFITQNQTIKDGSTLVSEGLRFEMGFFSFNNSSSRYVGIWYYNVTSAYVWVANREKPIKNREGFITIKNDGNLVVLDGQNNEVWSSNASKISINNSQAVLHNNGNLILSDRENNKEIWQSFEDPTDTYLPGMKAPVSGGNGIGKDATFCSWKSENDPSLGNYTMSVDSEASPQIVIMEGEKRRWRSGYWDGRVFTGVPNMTGSYLFGFRLNTNDTGERYFVYEALENSDKVRFQLGYDGYERQFRWNEEEKEWNVILSEPNKKCEFYNSCGSFAICDMSDSSLCKCIKGFEPRDVKSWNSGNWSKGCKRMTPLKSERGGNSSGGDDGFLVQKGLKLPDFARLVSAVDSKDCEGNCLKNSSCTAYVNAIGIGCMVWHGELVDFQRLENQGNTLNIRLADSDLGDGKKKTKIGIILGVVAGIICLGIFVWLLCRFKGKLKVSSTSSTSNINGDVPVSKPTKSGNLSAGFSGSIDLHLDGSSINNAELSLFNFSSIIIATNNFSEENKLGQGGFGPVYKGRLPGGEQIAVKRLSRLSNQGLDEFKNEMMLIAKLQHRNLVRLLGCSIQGEEKLLVYEYMPNKSLDYFLFDPVKKTKLDSSRRYEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLAKIFGGNQNEGNTERVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIVSGRKNTSFRDSYDPSLIGYAWRLWNEEKIMELVDPSISDSTKKSKALRCIHIGMLCVQDSASHRPNMSSVVLMLESEATTLPLPVKPLLTSMRRYDDTEEFNTEPFDASVDLTVTGR* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3050 845 CDD B_lectin 38 156 IPR001480 -
Mtr4g3050 845 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 3 843 - -
Mtr4g3050 845 PIRSF SRK 7 843 IPR024171 GO:0004674
Mtr4g3050 845 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 3 843 - -
Mtr4g3050 845 ProSiteProfiles Protein kinase domain profile. 532 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3050 845 ProSiteProfiles PAN/Apple domain profile. 339 429 IPR003609 -
Mtr4g3050 845 Pfam Protein tyrosine and serine/threonine kinase 535 800 IPR001245 GO:0004672|GO:0006468
Mtr4g3050 845 SMART ntp_6 355 428 IPR003609 -
Mtr4g3050 845 ProSiteProfiles Bulb-type lectin domain profile. 32 153 IPR001480 -
Mtr4g3050 845 SMART blect_4 38 156 IPR001480 -
Mtr4g3050 845 SMART serkin_6 532 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3050 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 189 IPR036426 -
Mtr4g3050 845 CDD STKc_IRAK 538 803 - -
Mtr4g3050 845 CDD PAN_AP_plant 360 429 - -
Mtr4g3050 845 Gene3D - 28 153 IPR036426 -
Mtr4g3050 845 Pfam S-locus glycoprotein domain 216 325 IPR000858 GO:0048544
Mtr4g3050 845 SUPERFAMILY Protein kinase-like (PK-like) 518 824 IPR011009 -
Mtr4g3050 845 Pfam D-mannose binding lectin 80 184 IPR001480 -
Mtr4g3050 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Mtr4g3050 845 Pfam PAN-like domain 356 413 IPR003609 -
Mtr4g3050 845 Gene3D Transferase(Phosphotransferase) domain 1 608 809 - -
Mtr4g3050 845 Gene3D Phosphorylase Kinase; domain 1 504 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3050 Mtr-Chr4 44227490 44231498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3050 507 815 Receptor kinase-like Gene Family AT4G23230 61.613 9.88e-131 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr4g3050 PK_Tyr_Ser-Thr 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3050 - - mtr:MTR_4g091570 1623.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3050 4 44227490 44231498 Mtr2g0278 2 2705645 2709289 PCT
Mtr2g0281 2 2730268 2734815 Mtr4g3050 4 44227490 44231498 PCT