Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3048 ATGGCGTCGTCACTCCCTCACTTAGACGACGATTCCGTCTCCCCTTCCCCTCGTTCCAATCACTTCAACGACGCTCCTCCACGTGTCCGCTTCATGTGTAGTTTCGGCGGTAAAATCCTCCCCCGTCCCTCCGATAATCAGCTCCGTTACGTCGGCGGAGACACCCGTATCGTCGCCGTCAACCGCTCCATCTCCTTCTCCGCTCTTGTCCATAAACTCTCTAAACTCTCCGGTATGAGCAACATAACAGCCAAGTATCAACTCCCAAACGAAGACTTAGACGCGTTGATCACGGTAACAACTGACGAAGACGTGGATAACATGATAGACGAATACGACCGCGTCACACAGAGTGAAAACCCACGAGCAGCTCGTCTTCGTCTCTTCCTTTTCCCAGAAGGAGAAGATTCACGAACCAACAGTATCAGTTCACTCTTAAACGGTTCATCTAAAAGAGAAAACTGGTTCATGGATGCTTTAAACGGTGGCGTTTCTGGTTTAGAACGAGGAAGATCAGAAGCTTCTTCTATGGTTTCTGAAGTACCCGATTATCTATTCGGTTTGGATAATAACTCTGAACTACCCGAATCACGACCTAAAGAACAACAACGACATCTTCTTCAACAGCAAGATAATGTTTCGAATTCGGATCCGGGTTCTCCTGCTCCGGTTGTTTCTTCTTCACCGTTTTGTTCTACTTCATCAGTCTTGTCTGTGCCTTCTATTCCGAATCTTCCACCGGTTAAAACCAAACTTGATAACCAAGTTTCTGAACCGGTTTTCAAAGGAAATCAAATTGAAACTGAAACGGTTTTGCAACCACAATTGAAAATGGATAATTATCAGATTAACCCTGCAATTCACTACCAACAACCTCAACCACGACCACAACCACAAGAAGGTGCTTATTCTGGTCATCATGCACAACCGGTTCCGGTTTATTATATTCAGGGTTCGGTTCAACCCGGGAATGTACCGGTTCATATGCAAGGACATGGACATTATCCCTATGTTCAACAACCATATCATCAAGTGATGCAACCTCAGGTACCAATCGGGTATCATCAAATGATTCCGGGTACGGGTCAAGTGTATGGTGCGGGGATGAGGCATGTAGCCCCGGTTCAGCCCTACAGTCCTACCACGGTGGTTCACGATGGTTTAAAACAGCAAGTGTATCAAGGTGTCCAAAACAACTCCGGTCCAGTTCCGGTTTACCAGGCGATGGTGGGGACTGGTGGGGATGAACTGCAAAGAGGTGGAACGGGTCGGGGAACCAACTCGCCGCATAATTGA 1296 0.4722 MASSLPHLDDDSVSPSPRSNHFNDAPPRVRFMCSFGGKILPRPSDNQLRYVGGDTRIVAVNRSISFSALVHKLSKLSGMSNITAKYQLPNEDLDALITVTTDEDVDNMIDEYDRVTQSENPRAARLRLFLFPEGEDSRTNSISSLLNGSSKRENWFMDALNGGVSGLERGRSEASSMVSEVPDYLFGLDNNSELPESRPKEQQRHLLQQQDNVSNSDPGSPAPVVSSSPFCSTSSVLSVPSIPNLPPVKTKLDNQVSEPVFKGNQIETETVLQPQLKMDNYQINPAIHYQQPQPRPQPQEGAYSGHHAQPVPVYYIQGSVQPGNVPVHMQGHGHYPYVQQPYHQVMQPQVPIGYHQMIPGTGQVYGAGMRHVAPVQPYSPTTVVHDGLKQQVYQGVQNNSGPVPVYQAMVGTGGDELQRGGTGRGTNSPHN* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3048 431 MobiDBLite consensus disorder prediction 188 227 - -
Mtr4g3048 431 SMART PB1_new 43 131 IPR000270 GO:0005515
Mtr4g3048 431 SUPERFAMILY CAD & PB1 domains 44 140 - -
Mtr4g3048 431 MobiDBLite consensus disorder prediction 1 25 - -
Mtr4g3048 431 Gene3D - 49 132 - -
Mtr4g3048 431 Pfam PB1 domain 45 132 IPR000270 GO:0005515
Mtr4g3048 431 PANTHER OS05G0427100 PROTEIN-RELATED 5 425 - -
Mtr4g3048 431 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 5 425 - -
Mtr4g3048 431 MobiDBLite consensus disorder prediction 206 227 - -
Mtr4g3048 431 CDD PB1_UP2 32 131 - -
Mtr4g3048 431 MobiDBLite consensus disorder prediction 412 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3048 Mtr-Chr4 44214618 44216398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3048 23 168 MAP Kinase Kinase Kinase AT5G57610 45.946 1.12e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3048 - - aprc:113858359 550.436