Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3045 ATGGGAAGAGCACCTTGTTGTGAAAAGAATAATGGCCTCAAAAGAGGACCATGGACACAAGAGGAAGACCAAAAACTTATAGATTATATTCAAAAACATGGTTATGGCAACTGGAGATTACTCCCAAAGAATGCTGGATTACAAAGATGTGGAAAGAGTTGTCGTCTACGTTGGACAAACTATCTCCGACCGGATATAAAGAGAGGACGATTCTCTTTTGAAGAAGAAGAAACCATAATTCAGCTGCATAGCATACTTGGCAACAAGTGGTCTTCAATTGCTTCTAGGCTACCAGGAAGAACAGACAATGAAATCAAGAATTATTGGAACACTCACATTAGGAAAAGACTCTTAAGAATGGGAATTGATCCTGTGACACATAATCCACGTTTTGATCTTTTGGACCTATCTTCTATCCTAAATTCATCTCTCTATGCCTCTACCTCATCATCACAAATGAACATCCAAAGGCTAATTGGTACACAATCAATAGTGAACCCTGAGATTCTAAAGTTGGCTTCATCACTCTTCTCTTCTCAAAATGGACAAGAGAATCACCAAATTGATCACAAACAACAAATTAGCTCACACATGGATCAAGAAGCATGCACCATGTTGTTGAATCCACCTTTTGATAATAATTCAATGTCTTTCATTCAAACACACTTGGAGAATATATACTCATCATTTTTACCTGAATTTGGCTTCCAACAACATCATGAAAATGTTCAATTAAATTATTTGCATTGCAATGGAATTGCTTCAAGTAATGTAACAGAGGATTTTGTTCATCAATTACCATGCTATAACTACTTAAGTTCTGATTATCATGCAAATGATTTAAATGTGGACCCTCACATATCAGAAACTTCAACCTTTCATTGCAATAACAACAACCAGAATTTTAATTTCGCTTCAGTTCTATCTACACCTTCATCAAGTCCCACACAGTTGAATTCAAATTCTGCGAATATGAATGAAAGCAGTAGTACTGAAGATGAGACAGAGAGCTATGTTAGCAATAACATGTTTGAATTTCATATCTCAGATATCTTAGGTGTGAATGAGTTCATGTAA 1077 0.3584 MGRAPCCEKNNGLKRGPWTQEEDQKLIDYIQKHGYGNWRLLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSSIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHNPRFDLLDLSSILNSSLYASTSSSQMNIQRLIGTQSIVNPEILKLASSLFSSQNGQENHQIDHKQQISSHMDQEACTMLLNPPFDNNSMSFIQTHLENIYSSFLPEFGFQQHHENVQLNYLHCNGIASSNVTEDFVHQLPCYNYLSSDYHANDLNVDPHISETSTFHCNNNNQNFNFASVLSTPSSSPTQLNSNSANMNESSSTEDETESYVSNNMFEFHISDILGVNEFM* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3045 358 Gene3D - 15 67 - -
Mtr4g3045 358 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Mtr4g3045 358 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Mtr4g3045 358 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Mtr4g3045 358 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr4g3045 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Mtr4g3045 358 PANTHER TRANSCRIPTION FACTOR MYB41 1 352 - -
Mtr4g3045 358 Gene3D - 70 117 - -
Mtr4g3045 358 MobiDBLite consensus disorder prediction 309 336 - -
Mtr4g3045 358 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Mtr4g3045 358 CDD SANT 70 113 IPR001005 -
Mtr4g3045 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 352 - -
Mtr4g3045 358 CDD SANT 17 62 IPR001005 -
Mtr4g3045 358 SMART sant 14 64 IPR001005 -
Mtr4g3045 358 SMART sant 67 115 IPR001005 -
Mtr4g3045 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3045 Mtr-Chr4 44185666 44187245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3045 1 358 MYB Transcription Factor Family AT4G21440 56.764 1.26e-117 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g3045 Myb_DNA-binding 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3045 K09422 - gmx:100810143 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3045 4 44185666 44187245 Mtr2g0298 2 2886742 2888300 PCT