Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3025 ATGAACGACTTGTTTTCAAATTCCTTCAAAAAGTACACCGATTTGAAGGAACAAGCTTACCTTGATGATGTCGAGGCAGGGAATCGAGAAACTGTTAATCTCGATAAATTCTTCGAAGATGTTGAGAATATAAAAGAGGACATGAAAACAATTGAACAATTGTATAGGAAATTGAAAGAGGCTAATGAAGAAAGTAAAACCGTGCACAATGCTAAAACCATGAAAGAACTTCGAGCACGAATGGACAAAGATGTTGAACAAGTCCTTAAACGTGTCAAAATTATTAAAGGAAAACTCGAAGCATTGGATCGTTCAAATGCAGCTAATAGAAACATTCCAGGGTGTGGTCCAGGTTCATCAGCAGATAGAACTAGAACTTCAGTGGTTAGTGGTTTAGGGAAGAAACTTAAAGATATGATGGATGATTTTCAAGGTTTGAGAGCAAGAATGCAACTTGAGTATAAGGAAACGGTGGAACGGAGGTATTTTACAATAACGGGAGAGAAAGCGGATGAAGAAACTATAGAAAATTTGATATCAAGTGGAGAAAGTGAAAATTTCATGCAAAGGGCAATTCAAGAACAAGGTAGGGGTCAAATAATGGATACTATTTCGGAAATTCAAGAAAGACATGATGCTGTTAAGGAAATTGAGAAGAATTTGATTGAGTTGCATCAAGTGTTTTTGGATATGGCAACTTTGGTAGAGTCTCAAGGACAACAACTTAATAATATTGAGAGCCATGTTGCACATGCAAGTTCTTTTGTAAGAAGAGGGACAGAACAACTTCAGGAAGCTAGAGTGCAACAAAAGAATTCTAGGAAATGGACATGTTATGCCATAATTCTTGGTATTGTTCTAGTTGTTGTGCTTTTGTTTCCTCTCTTGACATCACTTTTGCCTCATTTGTTAAAATGA 918 0.3638 MNDLFSNSFKKYTDLKEQAYLDDVEAGNRETVNLDKFFEDVENIKEDMKTIEQLYRKLKEANEESKTVHNAKTMKELRARMDKDVEQVLKRVKIIKGKLEALDRSNAANRNIPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQLEYKETVERRYFTITGEKADEETIENLISSGESENFMQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMATLVESQGQQLNNIESHVAHASSFVRRGTEQLQEARVQQKNSRKWTCYAIILGIVLVVVLLFPLLTSLLPHLLK* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3025 305 CDD SynN 34 191 IPR006011 GO:0016020
Mtr4g3025 305 SMART SynN_4 29 155 IPR006011 GO:0016020
Mtr4g3025 305 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mtr4g3025 305 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Mtr4g3025 305 SMART tSNARE_6 199 266 IPR000727 -
Mtr4g3025 305 CDD SNARE_syntaxin1-like 203 265 - -
Mtr4g3025 305 Pfam SNARE domain 241 292 IPR000727 -
Mtr4g3025 305 Coils Coil 34 71 - -
Mtr4g3025 305 Gene3D - 34 161 - -
Mtr4g3025 305 PANTHER SYNTAXIN 10 296 IPR045242 -
Mtr4g3025 305 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Mtr4g3025 305 Gene3D - 193 296 - -
Mtr4g3025 305 PANTHER T-SNARE-RELATED 10 296 - -
Mtr4g3025 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3025 Mtr-Chr4 43895366 43896283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3025 1 304 SNARE and Associated Proteins AT1G61290 77.632 3.87e-179 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3025 K08486 - gmx:100805869 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3025 4 43895366 43896283 Mtr2g0308 2 3020228 3022142 PCT