Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3015 ATGGGAGCAGAAGTGATTGTGACGTGGGGGACATGGGAGGAGCTTCTTCTTGGTGGAGCTGTTATCCGGCACGGTACTGGTGATTGGTCCGTCGTCGCGGCGGAGCTCCGAGGGAGAACTCATTCTCCTTCCGCTATTACACCCGAGGTCTGTAAAGCCAAATATGAAGAATTGCAACAGCGCTATTCAGGCTGCACGGCTTGGTATGAGGAGCTTAAGAAGAGAAGAGTAGCAGAGCTTAAGCGAGCTTTGGAGAAATCAGAAGATTCAATTGGGTCTCTTGAATCAAAGCTTGAATTCCTCAAGGCCGACAAGAATGAGAAAAGAGATGATTGTCATGTTGACAACAACTCAGTTGGACCAGAATTAGATGTTCCTTCACAGAAATTGGAGAGAGTTGAATCTTCCAGTAAAGAGTTGTCAAAGGATGGGCTATCTGCTGGGAGTTTTACACACCAAACCGATACAAACTGGTCTCATGAATGCCAGGTTCCAGCAATGTCTTCTGAAGACATGGAGATTTCGGCTGGTGTTTCAGGGTCTATTGAACATGAGAAAGTTTTGAATATAGATAAGTTGACAGATACAGCTGGGAAAAGAGATGATTGTCATGTTGACAACGAATCAGTTGGACCAGAATCACATGTCCCTTCACAGAAATTGGAGAGAGTTGAATCTTCAACTAAAGAGACGTCAAAGGATGGGTTATCTGCTGGGAGTTTTACACATCAAACCCAGACAAACTGGTTTCATGAATGCCAAATTCCAGCAATGTCTTCTGAAGACATGGAAATTACGCCTGGTGTTTCAGGGTCAACTGAACATGAGAAGGTTTTGAATGTAGATAAGTTGACAGAGACTGTATATGAAGGACAGGGAGGGTGTTTTAAAAAAAGGAGAGGAAAGAGAAAGAGGAAGGATTGTGCCAGAAATATTAATGAAGCGAGTGTGAGAGAAAGTGATTTTTCAATTGTCGTGTCCCGGTTGAAAGAAAGTTCTACCAGCAATTGTGGTGAGGTTGTCAAATCTTCTGGTGTAACTGAGGAGAACACGAACTTGAAAAAGGATGGAACAAAAGATCTGATGGCGATTTTAGATTCTATTTTGGAAATTAAAGGTGCTTCTTGCTTCTGTCGCAAGCATGATAGCCAGCAGAAGCGACAAAGGTACAAGCAGTTAATCCAGAGACACATGGATTTTGACACTATAAGGTCAAGAATTAGCAACAAAACAATTGATTCAGTGGTGCAACTTTTCAGAGACATGTTTCTATTGACCACCAATGCTTTGATGTTCTACTCCAAGAACACCCGTCAATATAAATCTGCACTACTCATGAGAGATATTGTCAAAGAAAAACTGACGGAGAACAGGAGGAATGTCATACATTCTAATGTCGACACTGTCTGCGCTACTCCTTCTCTGAAAGTCCCAAGTGTCCGCCCTTGTAACCAGAAGATTAATGCTGCAAAGGCAGCTGATGGCAGCGATCCTGCCTCGGGGGTCTCAAATAAAGCCAAGAAGCCTAGGACTGGTGGTAGTAAAGAGAATTCTCTGTCTTCGGTGAAAACCTTACACATCAAGAAAGCTGTCGGTGGATCTAAAAAACATGAACCTTCAACTCCGAATCTAATGAAGGAAATGAAGGAAAAGAAAAGACGGAGAACTAGGCTATGA 1677 0.4287 MGAEVIVTWGTWEELLLGGAVIRHGTGDWSVVAAELRGRTHSPSAITPEVCKAKYEELQQRYSGCTAWYEELKKRRVAELKRALEKSEDSIGSLESKLEFLKADKNEKRDDCHVDNNSVGPELDVPSQKLERVESSSKELSKDGLSAGSFTHQTDTNWSHECQVPAMSSEDMEISAGVSGSIEHEKVLNIDKLTDTAGKRDDCHVDNESVGPESHVPSQKLERVESSTKETSKDGLSAGSFTHQTQTNWFHECQIPAMSSEDMEITPGVSGSTEHEKVLNVDKLTETVYEGQGGCFKKRRGKRKRKDCARNINEASVRESDFSIVVSRLKESSTSNCGEVVKSSGVTEENTNLKKDGTKDLMAILDSILEIKGASCFCRKHDSQQKRQRYKQLIQRHMDFDTIRSRISNKTIDSVVQLFRDMFLLTTNALMFYSKNTRQYKSALLMRDIVKEKLTENRRNVIHSNVDTVCATPSLKVPSVRPCNQKINAAKAADGSDPASGVSNKAKKPRTGGSKENSLSSVKTLHIKKAVGGSKKHEPSTPNLMKEMKEKKRRRTRL* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3015 558 SMART bromo_6 354 459 IPR001487 GO:0005515
Mtr4g3015 558 MobiDBLite consensus disorder prediction 197 240 - -
Mtr4g3015 558 CDD SANT 8 58 IPR001005 -
Mtr4g3015 558 PANTHER BROMODOMAIN PROTEIN 1 196 - -
Mtr4g3015 558 PANTHER BROMODOMAIN PROTEIN 196 466 - -
Mtr4g3015 558 PANTHER BROMODOMAIN PROTEIN 467 557 - -
Mtr4g3015 558 Coils Coil 70 111 - -
Mtr4g3015 558 MobiDBLite consensus disorder prediction 109 153 - -
Mtr4g3015 558 Pfam Bromodomain 363 443 IPR001487 GO:0005515
Mtr4g3015 558 MobiDBLite consensus disorder prediction 531 549 - -
Mtr4g3015 558 Gene3D - 322 468 IPR036427 GO:0005515
Mtr4g3015 558 SUPERFAMILY Bromodomain 357 457 IPR036427 GO:0005515
Mtr4g3015 558 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 196 466 - -
Mtr4g3015 558 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 1 196 - -
Mtr4g3015 558 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 467 557 - -
Mtr4g3015 558 ProSiteProfiles Bromodomain profile. 377 440 IPR001487 GO:0005515
Mtr4g3015 558 MobiDBLite consensus disorder prediction 489 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3015 Mtr-Chr4 43804122 43809189 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr4g3015 Bromodomain 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3015 - - mtr:MTR_4g090460 1065.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3015 4 43804122 43809189 Mtr2g0324 2 3167422 3177568 PCT