Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3011 ATGGATAATCTAATATTTAAGATAAGGAATTTATACACTTTGGTTCTTTTACTTTTTGTACTGTGTTTTAAGCCTTCTTTTTCATCTAGATCACATAGGCACTATTCGGGTGGTGATGGAAGAAAATTGAGGAGTTCTGGTGATAATGTTAGTGATCTTGTGACTCACTTGCCTGGTCAGCCTCAAGTAGACTTCCAGCACTATGCTGGTTATGTCACTGTCAATAAAACCAATGGAAGAGCACTCTTTTATTGGTTCTATGAGGCTATGGCTAAGCCAGAAGAGAAACCATTGGTGTTGTGGCTTAATGGAGGTCCTGGGTGCTCCTCTGTGGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTGGATAATAATAATGATGGACAAGGCCTTAAATTTAATAACTTCTCATGGAACAAAGAAGCCAACATGTTATTCCTAGAATCTCCTGTCGGAGTTGGCTTTTCCTATTCAAATACAACCAGTGATTATCAACAATTGGGTGATGACTTCACAGCCAATGATGCTTACAATTTTCTACACAATTGGTTCCTCAAGTTCCCATCATATAGAAGTAAAACATTTTACATAGCAGGAGAAAGCTATGCAGGAAAGTATGTACCAGAACTTGCTGAACTTATCCATGATAGGAACAAGGACCCATCTCTTTACATTGATCTCAAGGGAATTTTGCTAGGTAACCCTGAAACATCTGATGCTGAGGATTGGATGGGACTAGTTGATTATGCCTGGAGTCATGCTGTGATATCTGATGAAACTCACAAAACAATCAAGACAAGTTGTGACTTTAACAGTAGTGATCCATGGAAAAATGAAGATTGTGATCAAGCAGTTGATGAAGTACTCAAACAGTATAATGAAATTGATATCTATAGTCTCTATACCTCTGTCTGCTTTGCCTCTACAGCACGTTCAAATGGTCATTCAATGCAAACTTCAACCAAACGTTCATCCAAAATGATGCCTAGAATGATGGGTGGTTATGACCCATGCTTGGATGACTATGCTAAAGCTTTCTATAACAGACCAGATGTTCAGAAGGCCCTTCATGCTAGTGATGGTCATAATCTAAAGAATTGGAGTATTTGCAACAACAAGATATTCACTGACTGGGCAGATTCAAAACCAACGGTTATCCCAATTTACAAGAAACTTATATCAGCAGGACTTAGGATTTGGGTTTACAGTGGAGACACAGATGGTAGAGTACCAGTTCTATCAACTAGGTACAGCTTAAGTACTCTAGCTTTGCCTGTCACTAAACCATGGAGCCCTTGGTACCATGAAAATGAGGTTAGCGGATGGTATGAAGAATATCAAGGGCTTACATTTGCAACATTTAGAGGAGCAGGTCACGCAGTTCCCTGTTTCAAACCAAGCAACTCACTTGCGTTTTTCACCTCCTTTCTACATGGAGAAACACCTCCTTCTACAAAATAA 1467 0.3933 MDNLIFKIRNLYTLVLLLFVLCFKPSFSSRSHRHYSGGDGRKLRSSGDNVSDLVTHLPGQPQVDFQHYAGYVTVNKTNGRALFYWFYEAMAKPEEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDNNNDGQGLKFNNFSWNKEANMLFLESPVGVGFSYSNTTSDYQQLGDDFTANDAYNFLHNWFLKFPSYRSKTFYIAGESYAGKYVPELAELIHDRNKDPSLYIDLKGILLGNPETSDAEDWMGLVDYAWSHAVISDETHKTIKTSCDFNSSDPWKNEDCDQAVDEVLKQYNEIDIYSLYTSVCFASTARSNGHSMQTSTKRSSKMMPRMMGGYDPCLDDYAKAFYNRPDVQKALHASDGHNLKNWSICNNKIFTDWADSKPTVIPIYKKLISAGLRIWVYSGDTDGRVPVLSTRYSLSTLALPVTKPWSPWYHENEVSGWYEEYQGLTFATFRGAGHAVPCFKPSNSLAFFTSFLHGETPPSTK* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3011 488 ProSitePatterns Serine carboxypeptidases, serine active site. 199 206 IPR018202 GO:0004185
Mtr4g3011 488 PANTHER CARBOXYPEPTIDASE 13 485 - -
Mtr4g3011 488 SUPERFAMILY alpha/beta-Hydrolases 50 483 IPR029058 -
Mtr4g3011 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 136 148 IPR001563 GO:0004185|GO:0006508
Mtr4g3011 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 149 159 IPR001563 GO:0004185|GO:0006508
Mtr4g3011 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 185 210 IPR001563 GO:0004185|GO:0006508
Mtr4g3011 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 451 464 IPR001563 GO:0004185|GO:0006508
Mtr4g3011 488 Gene3D alpha/beta hydrolase 49 309 IPR029058 -
Mtr4g3011 488 Gene3D - 340 378 - -
Mtr4g3011 488 Pfam Serine carboxypeptidase 58 481 IPR001563 GO:0004185|GO:0006508
Mtr4g3011 488 Gene3D - 387 481 - -
Mtr4g3011 488 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 13 485 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3011 Mtr-Chr4 43730130 43734877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3011 345 482 Calmodulin-binding Proteins AT2G22960 32.374 1.28e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3011 K16297 - gmx:100793427 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3011 4 43730130 43734877 Mtr4g3011 4 43730130 43734877 ECH
Mtr4g3011 4 43730130 43734877 Mtr2g0335 2 3338216 3341507 PCT