Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2983 ATGTACGTTGCTTCTTCCATGCGCAAGTCTTTCAAGGATTCCTTAAAACTTCTCCAAGCTGATATTCAACACGCCAATACTCTGGCGTCCGATTTCCCTAGGGAGTATGATGGTGCATGTCTTCAGATGAGAATGTCATACAGTCCAGCTGCAACCTTGTTTCTCTTTTTTGTTCAATGGACTGATTGCCATCTTGCTGGTGCTCTTGGATTGTTAAGAATCCTAATTTACAAGGTGTATGTGGATGGAACAACCACCATGTCTACCCATGAAAGAAAAGCAAGTATAAGGGAATTCTATGCTGTCATTTATCCTTCTTTATTGCAACTTGAGAAAGGTGTTACTGACTCTGAGGATAAAAAGCAAAAGGCTGTATGCATGGAGAGGTATCGTAGAAGAGATGATGATGACTGTAGGCAATCTTCTGACATAGATATTGAAAGAGACGATGAATGTGGGATATGCATGGAGATGAATAGTAAAATTGTGTTGCCTAACTGTAATCATGTTATGTGCCTCAAGTGTTACCGAGAATGGCGAACGAGATCCCAGTCGTGCCCATTTTGCCGTGACAGTTTGAAGAGAGTGAACTCAGGGGATCTGTGGGTATACACTGATAGAAGGGATGTGGTTGATATGGCAACAGTGACAAGGGAGAATCTCAGAAGGCTTTTCATGTACATAGATAAGTTGCCTTTAATTGTTCCAGACTCCATCTTTGACGCGTATGACTCTCACATAAGGTAA 747 0.4163 MYVASSMRKSFKDSLKLLQADIQHANTLASDFPREYDGACLQMRMSYSPAATLFLFFVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLEKGVTDSEDKKQKAVCMERYRRRDDDDCRQSSDIDIERDDECGICMEMNSKIVLPNCNHVMCLKCYREWRTRSQSCPFCRDSLKRVNSGDLWVYTDRRDVVDMATVTRENLRRLFMYIDKLPLIVPDSIFDAYDSHIR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2983 248 PANTHER RING FINGER PROTEIN 41, 151 3 248 - -
Mtr4g2983 248 ProSiteProfiles Zinc finger RING-type profile. 152 190 IPR001841 -
Mtr4g2983 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8-LIKE 3 248 - -
Mtr4g2983 248 ProSitePatterns Zinc finger RING-type signature. 167 176 IPR017907 -
Mtr4g2983 248 SMART ring_2 152 189 IPR001841 -
Mtr4g2983 248 Pfam Zinc finger, C3HC4 type (RING finger) 149 195 - -
Mtr4g2983 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 199 IPR013083 -
Mtr4g2983 248 SUPERFAMILY RING/U-box 142 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2983 Mtr-Chr4 43483367 43487218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2983 149 194 C3H Transcription Factor Family AT5G01960 39.130 5.72e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2983 K25840 - gmx:100777318 454.136