Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2976 ATGAGTGGAAATGTGATGGAGCTAAACTTTGGTTCATTAGACCAATTTTCTTCTGATCAAAATGGAGTGTCCCTTAAGCCATTACGGTGCCCTGCACCATTTCTATTGAAGACCTATGATTTGGTGGAACAAGGTATTGAAGGTGAAGATGGCATTAAAATTGTGTCATGGAATGAAGAAGGAAATGGTTTTGTTGTGTGGTCTCCAGCTGAATTCTCAGAGCTCACCTTGCCTAAATATTTCAAGCACAACAATTTCTCTAGTTTTATTCGACAACTCAATACATATGGGTTTAAGAAAATATCATCTAAAAGATGGGAATTCCAACATGAGAAATTTCAAAAGGGTTGCAGGCACATGTTGGTTGAAATCAGTAGGAAAAAGTGTGAGCCAAGCGTGTTTCCTCAATACCTCAAGTCTTGTTCAGAGGAAAATGCAATGACTAATAATTCATCAGTTGAAGAAGACAATAACAATCATGAACTACTCATGGAGGAGAACAAGAACCTAAAGAAGGAGAGATTAGAGTTGCAAATGCAAATAGCTGAATGCAAGGCACTTGAAATGAAGTTGTTGGAGTGTCTCTCTCAGTATATGGATAACCGCCAAAATAAAGTTAGGAGACTATGTTAA 633 0.376 MSGNVMELNFGSLDQFSSDQNGVSLKPLRCPAPFLLKTYDLVEQGIEGEDGIKIVSWNEEGNGFVVWSPAEFSELTLPKYFKHNNFSSFIRQLNTYGFKKISSKRWEFQHEKFQKGCRHMLVEISRKKCEPSVFPQYLKSCSEENAMTNNSSVEEDNNNHELLMEENKNLKKERLELQMQIAECKALEMKLLECLSQYMDNRQNKVRRLC* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2976 210 SUPERFAMILY "Winged helix" DNA-binding domain 31 127 IPR036390 -
Mtr4g2976 210 Coils Coil 153 190 - -
Mtr4g2976 210 Gene3D - 28 128 IPR036388 -
Mtr4g2976 210 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE 26 210 - -
Mtr4g2976 210 ProSitePatterns HSF-type DNA-binding domain signature. 77 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr4g2976 210 Pfam HSF-type DNA-binding 34 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr4g2976 210 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 26 210 IPR027725 -
Mtr4g2976 210 SMART hsfneu3 30 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr4g2976 210 PRINTS Heat shock factor (HSF) domain signature 38 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr4g2976 210 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr4g2976 210 PRINTS Heat shock factor (HSF) domain signature 89 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2976 Mtr-Chr4 43445368 43447251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2976 30 199 HSF AT5G62020 35.204 2.83e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr4g2976 HSF_DNA-bind 2e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2976 K09419 - gmx:100783723 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2976 4 43445368 43447251 Mtr4g2976 4 43445368 43447251 ECH