Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2975 ATGTTGTGTTGTATACTTGTATTAGCATTATCGGTTTATTATTGCATCATCATCTTCATCACTCTCCCGCCCAGGCAACGCCATTTCCATTATCTTCTGATCTCTGCAAAAGCAACTACACGCAAGATCTGGTTCAACGCAACAATGGCGGGTCGATTCTTAGGATCTTCTTCTGCTTCGATCGACATGATCGTCACCAATACGCCATCTCAGGAACTCGCTCTAACCAACCTCGCTTTCATCTCCGCCTCCGATCTTCCTAAATTCGCCGTCCCCGGTCACGATAATCTATACCTCGCTTCCATCGGCGATTCCTTCGTTTTCTCTATCTCAGCTCATGAAAGCATACGTGGAGGCCATATTGCGTTGAATTCAATTCAACGTCGATGTGCAAGAGTTTCTGCTGCCGAATCTGTACCTGTGACGCGATTTGTGCCGCCTGAAAATTTCAACCTGGCAGTGCTGCAACTTGAATTGGAATTCATTAAAAAGGCTGGAAACAAAAATGAACAGATTGATGCTATAGTACTTGCCAAGCAACTACGAAAGAGGTTTATAAAGCAGGTAATGACAGCAGGGCAGAAAGTGTTATTTGAGCATCAGGGAAATAATTATAGCTTTACAGTCAGTCAAGTTACTGTTGAGGGCCAACAAAGGTCTAGTTCTATTGACAGAGGGATGATTTCAGAGGACACATTCATAGCTTTTGAAGCATCACGTGATAGTGGAATTAAGATTATCAATCAGCGCGAATCTACTACTAGCAACATTTTTAAGCAGAAAGAATTTAACCTTGAGTCTCTGGGTATTGGTGGCCTGGGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCATCTCGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGGATCAAGCATGTGAAGGGCATGCTGCTTTATGGTCCTCCTGGAACTGGAAAGACTCTTATGGCACGTCAAATTGGAAAAATTTTGAATGGCAAGGAACCAAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTGGGTGAAACTGAAAAGAATGTGAGGGACCTTTTTGCCGATGCTGAACAGGATCAGAGGAACCTAGGTGATGAAAGTGATTTACATGTTATTATATTTGATGAAATTGATGCTATCTGTAAGTCCAGAGGCTCCACTAAAGATGGTACGGGGGTTCATGATAGCATTGTGAACCAGCTTCTTACCAAGATAGATGGTGTGGAATCACTAAACAATGTTTTGCTTATTGGAATGACCAACAGAAGAGACATGCTTGATGAAGCACTCTTACGACCAGGGCGGTTGGAAGTCCAGGTTGAGATAAGCCTCCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCACACTAACAAGATGAAAGAGAATTCTTTTCTAGCTCCTGATATAAACCTTCAAGAGCTTGCTGCTCGAACCAAAAACTACAGTGGTGCGGAACTTGAAGGTGTTGTGAAAAGTGCTGTCTCATATGCCTTAAATAGACAATTGAGCCTAGAGGACCTCACTAAACCAGTGGAGGAGGAAAATATTAAGGTTACGATGGATGACTTTTTGAATGCACTCCATGAAGTTATTCCTGCATTTGGAGCTTCCACTGACGATCTTGAGCGATGCAGACTCCATGGCATGGTGGAGTGTGGTGATCGACATAAGCACATTTATCAGAGGGCAATGCTAATTGCAGAGCAAGTTAAAGTGAGCAAAGGAAGCCCCCTTGTTACTTGTCTTCTGGAAGGTTCCCGTGGCAGTGGTAAAACCGCAATTGGAGCTACTGTAGGCATTGATAGTGACTTCGCATATGTCAAGATAATTTCAGCTGAAACAATGATTGGTCTACATGAGAGCACTAAATGTGCTCAGATTATTAAGGTTTTTGAGGATGCGTACAAGTCACCTTTGAGTGTCATTGTTCTCGATGACATTGAGAGATTATTGGAGTATGTGGCCATTGGTCCTCGTTTTTCAAACATAATTTCGCAGACATTGCTGGTTCTGCTCAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGGTTATTGGAACAACAAGTGAAGTGGACTTCTTGGAGTCACTTGGATTTGTTGATACATTCTCGGTAACTTACAATGTTCCCACCTTGAACAAAGAAGATGCAAAGAAGGTCTTGGAACAGTTGAATGTTTTTGCTGAAGAAGATATTGTTTCTGCCGCAGATGCTTTGGATAATACGCCTATCAAGAAGTTATACATGTTGATTGAGATGGCAGCGCAGGGTGCGCATGGTGGATCTGCAGAAGCTATCTATTCTGGCCAAGAGAAGATTAATATATCTCATTTCTACGATTGCCTCGGGGATGTTGTCAGGGTGTATAGATAG 2388 0.4242 MLCCILVLALSVYYCIIIFITLPPRQRHFHYLLISAKATTRKIWFNATMAGRFLGSSSASIDMIVTNTPSQELALTNLAFISASDLPKFAVPGHDNLYLASIGDSFVFSISAHESIRGGHIALNSIQRRCARVSAAESVPVTRFVPPENFNLAVLQLELEFIKKAGNKNEQIDAIVLAKQLRKRFIKQVMTAGQKVLFEHQGNNYSFTVSQVTVEGQQRSSSIDRGMISEDTFIAFEASRDSGIKIINQRESTTSNIFKQKEFNLESLGIGGLGAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRNLGDESDLHVIIFDEIDAICKSRGSTKDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRRDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDINLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKPVEEENIKVTMDDFLNALHEVIPAFGASTDDLERCRLHGMVECGDRHKHIYQRAMLIAEQVKVSKGSPLVTCLLEGSRGSGKTAIGATVGIDSDFAYVKIISAETMIGLHESTKCAQIIKVFEDAYKSPLSVIVLDDIERLLEYVAIGPRFSNIISQTLLVLLKRLPPKGKKLMVIGTTSEVDFLESLGFVDTFSVTYNVPTLNKEDAKKVLEQLNVFAEEDIVSAADALDNTPIKKLYMLIEMAAQGAHGGSAEAIYSGQEKINISHFYDCLGDVVRVYR* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2975 795 Gene3D - 256 447 IPR027417 -
Mtr4g2975 795 Pfam AAA+ lid domain 473 528 IPR041569 -
Mtr4g2975 795 CDD AAA 567 700 - -
Mtr4g2975 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 545 IPR027417 -
Mtr4g2975 795 PANTHER BNAA03G50350D PROTEIN 109 792 - -
Mtr4g2975 795 SUPERFAMILY Cdc48 domain 2-like 147 251 IPR029067 -
Mtr4g2975 795 PANTHER VESICULAR-FUSION PROTEIN NSF 109 792 IPR039812 GO:0016887|GO:0035494
Mtr4g2975 795 Gene3D - 57 144 - -
Mtr4g2975 795 SMART CDC48_N_2 62 147 IPR003338 -
Mtr4g2975 795 CDD AAA 304 447 - -
Mtr4g2975 795 Gene3D - 544 715 IPR027417 -
Mtr4g2975 795 SMART AAA_5 582 718 IPR003593 -
Mtr4g2975 795 SMART AAA_5 302 449 IPR003593 -
Mtr4g2975 795 ProSitePatterns AAA-protein family signature. 417 435 IPR003960 GO:0005524|GO:0016887
Mtr4g2975 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 550 757 IPR027417 -
Mtr4g2975 795 Pfam ATPase family associated with various cellular activities (AAA) 306 446 IPR003959 GO:0005524|GO:0016887
Mtr4g2975 795 Pfam ATPase family associated with various cellular activities (AAA) 587 701 IPR003959 GO:0005524|GO:0016887
Mtr4g2975 795 Gene3D - 448 535 - -
Mtr4g2975 795 SUPERFAMILY ADC-like 60 144 IPR009010 -
Mtr4g2975 795 Pfam Cell division protein 48 (CDC48), domain 2 171 235 IPR004201 -
Mtr4g2975 795 Gene3D - 147 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2975 Mtr-Chr4 43422754 43436051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2975 270 521 Calmodulin-binding Proteins AT3G56690 32.677 2.91e-29 123