Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2974 ATGGCTTTTGAGCATGAAGACTTCTTTACCCAAGAATGGAAAGCCATTCCAAATTCTGGCACAGAAACAGAAAAAAATTGTGACAGTTGTTTTGATTGCAATATCTGCTTAGACTTTGCACATGAACCAGTAGTCACACTCTGTGGTCACCTTTACTGCTGGTCCTGTATTTACAAATGGCTCTTTGTGCAAAGTGCCTCTCTTGCACCTGATGAGCCACCACAGTGTCCAGTTTGCAAGGATGGCATATCTCACACCAAAATGGTCCCTCTCTATGGCAGGGGCCAGACCCTCTCTCGCTGTGATCGCGACAGTGACGCAAAACCTACCCTTGAAGATATTTCTATACCGCCTAGACCACCTGCATCAGGGATTCAATCTCTATTGGCAATGGCAACATCGCCTCAAAATGGAAGTCGTCAGCAACTTCCATATCGTAATCCTTATCAGACTCAACACATTAATTCTTCTACATACCAAGATAATGACACACCACAAATGCATAATCTTGGTACCTTTATGACACCATTATTCCCTCAATTTGTCTTTGGCTTTGGCAACTCAGAAAATTCACATCATATGGTTGGAAATAGTAGCTCTAGGTGGAGAAGGCAAGAGATGTTGGCAAACAAATCATTGAACAGAATATCCTTTTTTCTCTTTTTATGCTTTCTCCTGTGTTTTATTCTCTTCTGA 696 0.4181 MAFEHEDFFTQEWKAIPNSGTETEKNCDSCFDCNICLDFAHEPVVTLCGHLYCWSCIYKWLFVQSASLAPDEPPQCPVCKDGISHTKMVPLYGRGQTLSRCDRDSDAKPTLEDISIPPRPPASGIQSLLAMATSPQNGSRQQLPYRNPYQTQHINSSTYQDNDTPQMHNLGTFMTPLFPQFVFGFGNSENSHHMVGNSSSRWRRQEMLANKSLNRISFFLFLCFLLCFILF* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2974 231 Pfam Zinc finger, C3HC4 type (RING finger) 33 79 IPR018957 GO:0046872
Mtr4g2974 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 5 231 - -
Mtr4g2974 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 98 IPR013083 -
Mtr4g2974 231 SUPERFAMILY RING/U-box 27 92 - -
Mtr4g2974 231 MobiDBLite consensus disorder prediction 100 120 - -
Mtr4g2974 231 CDD RING-HC_AtRMA_like 31 80 - -
Mtr4g2974 231 SMART ring_2 33 79 IPR001841 -
Mtr4g2974 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 231 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mtr4g2974 231 ProSiteProfiles Zinc finger RING-type profile. 33 80 IPR001841 -
Mtr4g2974 231 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2974 Mtr-Chr4 43415991 43418067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2974 8 217 C3H Transcription Factor Family AT4G27470 35.455 5.62e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2974 K10666 - gmx:100779793 255.373