Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2973 ATGGACTTTGAGCATGAAGAGTTCTTTAACCAAGAATGGAAAGCCGATGGAAATTCTGTGACAGAGACAGAGAAAGAGAATATTGACAATTGTTTTGATTGCCACATCTGCTTAGATTTTGCACACGAACCAGTAGTAACCTTATGTGGCCACCTTTTCTGTTGGTCTTGCATCTACAAATGGCTCTTTGTGCAAAGGGCTTCACTTGCACCTGATGAGCATCCACAGTGTCCAGTTTGCAAGCATGATATATCTCACACCAAAATGGTCCCTCTCTATGGAAGAGGCCAGACTCTATCTTCTCGACGCGGCCGCAACAGGAAGGCTACTCTTGAAGATATTTCTATACCACCAAGACCACCTGCTTCAGAGATTCAATCTCTACTGGAAACGCGAACATCACCTCAAAGTGATCAACAAGAACAAGAGAATGATGATACATCACAAGTGCAGAATCTTGATACCTTAGTGACACCGGTAATCCCTCGCTATATGTTTGGCAACTATGAAGATTTACATCTTATGGTGGCAAACAAATCATTGAACAAAATTTCTTTTTTTTTCTTTTTATGCTTTGTCATGTGTTTGATTCTTTTCTGA 600 0.4067 MDFEHEEFFNQEWKADGNSVTETEKENIDNCFDCHICLDFAHEPVVTLCGHLFCWSCIYKWLFVQRASLAPDEHPQCPVCKHDISHTKMVPLYGRGQTLSSRRGRNRKATLEDISIPPRPPASEIQSLLETRTSPQSDQQEQENDDTSQVQNLDTLVTPVIPRYMFGNYEDLHLMVANKSLNKISFFFFLCFVMCLILF* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2973 199 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 5 152 - -
Mtr4g2973 199 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 174 199 - -
Mtr4g2973 199 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Mtr4g2973 199 SMART ring_2 34 80 IPR001841 -
Mtr4g2973 199 CDD RING-HC_AtRMA_like 32 81 - -
Mtr4g2973 199 MobiDBLite consensus disorder prediction 98 151 - -
Mtr4g2973 199 ProSiteProfiles Zinc finger RING-type profile. 34 81 IPR001841 -
Mtr4g2973 199 SUPERFAMILY RING/U-box 26 94 - -
Mtr4g2973 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 103 IPR013083 -
Mtr4g2973 199 MobiDBLite consensus disorder prediction 126 151 - -
Mtr4g2973 199 Pfam Zinc finger, C3HC4 type (RING finger) 34 80 IPR018957 GO:0046872
Mtr4g2973 199 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 152 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mtr4g2973 199 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 174 199 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2973 Mtr-Chr4 43410014 43411108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2973 5 142 C3H Transcription Factor Family AT4G27470 43.885 3.63e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2973 K10666 - gmx:100782827 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2973 4 43410014 43411108 Mtr2g0372 2 3668403 3670480 PCT