Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2971 ATGATGCAAAGCCAACACCAAGTAAACAAAGAAGACGACGACGGCCCGCCACCTGGTTGGCAACCTATTCCCCCACCGCAACGTCCACGGCCACCGCCACCGTCACTCCCATCCGGTTTTGCTCAAATGGTTTGTGGTTCTTGTCGCCGCCTGCTTTCGTATCCACCAGGTGCCAAACATGTCAAATGTTCATGCTGTCAGACAGTCAACATTGTATTAGAAGCTGATCAGGTTGGACAAGTTAAGTGTGGGAGTTGTGCAGTATTGCTAATGTACCCATATGGTGCTCCACAAGTTAGGTGTTCATCATGCCGGTTTGTGACAGAAATCGGGACAACAAGCGGCCTCCATGGTCTGTACAACAAAGTAAACCAACTCCTCCCAAAGCTGGTTGTTAGCGACCTGTCCATTGTCCTATTAACTGGGTCATCCTTGTATAACAAATTATGA 450 0.4867 MMQSQHQVNKEDDDGPPPGWQPIPPPQRPRPPPPSLPSGFAQMVCGSCRRLLSYPPGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGAPQVRCSSCRFVTEIGTTSGLHGLYNKVNQLLPKLVVSDLSIVLLTGSSLYNKL* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2971 149 PANTHER PROTEIN LOL2 26 113 - -
Mtr4g2971 149 Pfam LSD1 zinc finger 45 69 IPR005735 -
Mtr4g2971 149 Pfam LSD1 zinc finger 83 107 IPR005735 -
Mtr4g2971 149 PANTHER PROTEIN LSD1 26 113 IPR040319 -
Mtr4g2971 149 MobiDBLite consensus disorder prediction 17 36 - -
Mtr4g2971 149 MobiDBLite consensus disorder prediction 1 36 - -
Mtr4g2971 149 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 42 72 IPR005735 -
Mtr4g2971 149 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 80 108 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Mtr4g2971 zf-LSD1 6.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2971 - - gmx:100780865 165.236