Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2960 ATGGCAACAGCAGTTAAGCACCTTTCATCGATGAGATTGAATGACAAGTCGAAGAACTCAAAGCACCGTGGAGGAAAGGTTACTGCGATTGAAACATCTGAGGATAAATGGAATATTGACCTCTCTAAGCTCTTTGTTGGTCCTAGGTTTGCTCATGGAGCTCATAGTAGGCTTTACCATGGTTTGTATGAAGACGAACCTGTTGCCGTCAAAAATATCAAGGTACCAGATGACGATGAACACGGAACAATAGCTGCTACATTAGACAAACAATTCTTCACGGAAGTCACGCTTTTATCTCGCCTCCACCATCCAAATGTTCTTAAGTTGGTAGCAGCATGCAGAAACCCACCTGTTTATTGTGTTATCACAGAGTATCTATCGGAAGGTTCGTTGAGGAGTTATTTGCACAAGTTGGAGGGAAAAACGATTTCTCTACAGAAACTAATTGCTTTTTCTTTGGATATTGCTCGTGGAATGGAATATATACACTCTCAAGGCGTCGTTCATCGAGACCTTAAACCAGAGAATGTCCTTATTAATGATGACTTTCACCTTAAAATTGCTGATTTTGGCATTGCTTGTGAGGAAGCACACTGCGAGTTACTTGCTGACGACCTTGGTACCTACCGTTGGATGGCACCTGAGATGATCAAGAGAAAATCCTATGGGAGAAAGGTTGATGTCTATAGTTTTGGGCTTATGTTATGGGAGATGCTTACCGGTAGAATACCATTCGAGGATATGACTCCCGTCCAGGCTGCTTTTGCTGTCCTAAATAAGAATTCAAGGCCTGTTATTCCTTCAAACTGCCCACCAGCTATGCGAGCTTTAATGGAGCAATGTTGGTCCTTGAATCCGGACAAAAGGCCTGAGTTCTGGCAGGTTGTTAAGGTGTTAGAACAATTTGAATCTTCGCTTGCTCGCGATGGAACGTTGACCCCGCTACAAAATCCTTGTGGACTTGATCATAAAAAAGGGCTTCTTCATTGGATTCACAAGCATAGTCCTACACATCAACATCATAGTAGTGGTTTTGTGGCTAAACCAAAATTTACATGTATATTCTGA 1071 0.422 MATAVKHLSSMRLNDKSKNSKHRGGKVTAIETSEDKWNIDLSKLFVGPRFAHGAHSRLYHGLYEDEPVAVKNIKVPDDDEHGTIAATLDKQFFTEVTLLSRLHHPNVLKLVAACRNPPVYCVITEYLSEGSLRSYLHKLEGKTISLQKLIAFSLDIARGMEYIHSQGVVHRDLKPENVLINDDFHLKIADFGIACEEAHCELLADDLGTYRWMAPEMIKRKSYGRKVDVYSFGLMLWEMLTGRIPFEDMTPVQAAFAVLNKNSRPVIPSNCPPAMRALMEQCWSLNPDKRPEFWQVVKVLEQFESSLARDGTLTPLQNPCGLDHKKGLLHWIHKHSPTHQHHSSGFVAKPKFTCIF* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2960 356 SMART serkin_6 44 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g2960 356 MobiDBLite consensus disorder prediction 1 27 - -
Mtr4g2960 356 CDD STKc_MAP3K-like 51 300 - -
Mtr4g2960 356 MobiDBLite consensus disorder prediction 11 27 - -
Mtr4g2960 356 Gene3D Phosphorylase Kinase; domain 1 32 128 - -
Mtr4g2960 356 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 328 - -
Mtr4g2960 356 Pfam Protein tyrosine and serine/threonine kinase 51 300 IPR001245 GO:0004672|GO:0006468
Mtr4g2960 356 ProSiteProfiles Protein kinase domain profile. 44 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g2960 356 Gene3D Transferase(Phosphotransferase) domain 1 129 321 - -
Mtr4g2960 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Mtr4g2960 356 PIRSF ILK 4 316 - -
Mtr4g2960 356 SUPERFAMILY Protein kinase-like (PK-like) 31 300 IPR011009 -
Mtr4g2960 356 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 328 - -
Mtr4g2960 356 PRINTS Tyrosine kinase catalytic domain signature 124 137 IPR001245 GO:0004672|GO:0006468
Mtr4g2960 356 PRINTS Tyrosine kinase catalytic domain signature 162 180 IPR001245 GO:0004672|GO:0006468
Mtr4g2960 356 PRINTS Tyrosine kinase catalytic domain signature 208 218 IPR001245 GO:0004672|GO:0006468
Mtr4g2960 356 PRINTS Tyrosine kinase catalytic domain signature 227 249 IPR001245 GO:0004672|GO:0006468
Mtr4g2960 356 PRINTS Tyrosine kinase catalytic domain signature 271 293 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2960 Mtr-Chr4 43285690 43287480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2960 5 339 MAP Kinase Kinase Kinase AT5G58950 62.209 1.21e-161 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Mtr4g2960 PK_Tyr_Ser-Thr 3.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2960 - - mtr:MTR_4g088745 739.184