Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2952 ATGGGAGCAACAAGACCGGTTGCAGAGATGGAGTTTGAAGAAGAGGTTGTTCATCGAAAAAGAGGTCAAGGTTTTGATATCTTTATTCATGATTACTTCAAGAAGAGAGGATTGTTACGCTGTGCTGAGCTTTTTGCAAACGAAGCTCACATTACTGGATCAATTCCCCCTGAATTCGATCAACACCCACGTGGAATCTTGTCCGACATTTGGAGTATAAGGCAACAGACTCAACTCACTCTAGGATCCTCAAGTCAGAGTCAGGCCCCGCAAATAATCAACTCTACCCGTCAAATAATTCAGGATGGGTATTCTATTCAAAGCATTACAAGTTTTCCAAGCGGTCAGACACTTTCGTCCTGCGATTTTTCATCAGATGGAAAGATTGTAGCAAGCGGTGGGAACAGCGGGAAGCCTTTCATTTGCAACATGGATACTTCTACTTCTGTTACTGCCTCAGAGTCACATTCATCTACCATCTTAGATGTTAGATTTCAACCAGGATCCACTATATTTGCAACATCTTCTGCTGATAAAACAATAAAATTCTGGGATGCTAAAACGCCTGAAAGAGCGTTGTTTGATTTTAAATGTGATGGGATAGTAAGATCATTGGACTTCCACCCAACAGAAAGAATTCTTTGCTCGTCTGATACCTGTGATTTAATTAAAGTATGGGATCTCAATCAGCGTGTCATAATGAAGACCTTTATGGAAGGTGGATGCCCAGTGAGATTTCAGCCTGGATCTGGGAAGCTTTTGGCAGTTGCTAATCAAAATGTTGTTACCATACTTGAATTTCCGTCTTTGGCTGTTAAGTACCGTCTTCAGGGTGGTCATGTCACATATGTTTGTTCCTTATGTTGGGATATCACTGGGCAAACAATCGCCTCTGTCAGCGAAGATTGTGTATGTGTCTGGTCGCTTTCTATGGGCGGACAATGCTTTTTCAAGTATCCATCAAACGGGAATAATTTTCAGTCGGTCATATTCCATCCTCAATACCGTAATGTCTTAGTTGTTGGCGGTTTTCAGGGCATGGAATTGTTGACTCTTGGATACGGGCAAATACATCGTTTTAGGGCTTCTAATTTATCATTTACTGGACTTGCAGCTTGTACGGGAGTTGAATTCATTGCATTATCATTTACAAGCAATGCCTCTGAGTCTGTGGTGAACATATGGAAATGA 1191 0.4148 MGATRPVAEMEFEEEVVHRKRGQGFDIFIHDYFKKRGLLRCAELFANEAHITGSIPPEFDQHPRGILSDIWSIRQQTQLTLGSSSQSQAPQIINSTRQIIQDGYSIQSITSFPSGQTLSSCDFSSDGKIVASGGNSGKPFICNMDTSTSVTASESHSSTILDVRFQPGSTIFATSSADKTIKFWDAKTPERALFDFKCDGIVRSLDFHPTERILCSSDTCDLIKVWDLNQRVIMKTFMEGGCPVRFQPGSGKLLAVANQNVVTILEFPSLAVKYRLQGGHVTYVCSLCWDITGQTIASVSEDCVCVWSLSMGGQCFFKYPSNGNNFQSVIFHPQYRNVLVVGGFQGMELLTLGYGQIHRFRASNLSFTGLAACTGVEFIALSFTSNASESVVNIWK* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2952 396 Gene3D - 237 348 IPR015943 GO:0005515
Mtr4g2952 396 SUPERFAMILY WD40 repeat-like 105 346 IPR036322 GO:0005515
Mtr4g2952 396 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 25 396 IPR044716 GO:0003714
Mtr4g2952 396 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG-LIKE ISOFORM X1 25 396 - -
Mtr4g2952 396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 153 188 - -
Mtr4g2952 396 ProSiteProfiles LIS1 homology (LisH) motif profile. 21 53 IPR006594 GO:0005515
Mtr4g2952 396 SMART WD40_4 146 185 IPR001680 GO:0005515
Mtr4g2952 396 SMART WD40_4 189 227 IPR001680 GO:0005515
Mtr4g2952 396 SMART WD40_4 269 308 IPR001680 GO:0005515
Mtr4g2952 396 SMART WD40_4 105 143 IPR001680 GO:0005515
Mtr4g2952 396 Gene3D - 69 236 IPR015943 GO:0005515
Mtr4g2952 396 Pfam WD domain, G-beta repeat 155 185 IPR001680 GO:0005515
Mtr4g2952 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 153 194 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2952 Mtr-Chr4 43219634 43222832 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2952 77 309 U-box Gene Family AT2G33340 23.922 2.99e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2952 - - cam:101496351 369.007