Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2950 ATGGCTGGTGTTTCTAGCAGAACTCGTAGCAAGAATGTTCCGTTGTTTGGTTCTCTTTTACTTGGTGGTTCATCAAAACGGAGAAAGAGTGATGAAGAAGATAAGGGGTTGGACTATGTTTCTCGTTCTAAAAAAAGGAAGATGAACGAAGAACCTTTTGTTGTTCCTGCAGATGCTGAGGTAGTTTCCATCGATGATGATGAATATGAAGATGTTGGTCAAGAAGGTTCAGAGCATAGTGATGACAAGATGTCTAAAGATGGAAAGTTTGTTGATGAAAATTGTGAGAGGGAACAAGATAACCCGGTTTCGATAAGTTCAGATGAGTATGGTGAAAGTGATGAAGAACACTTTGTTGATTCTGATGCTGATAATGAAGAAGAAGAGGAAGAAGAAGAAAAAAAAGAAGATGATGCTGTTAAAGAGGGAGTAAAAAGTGATGAAAGTGGGGGAATTGGTAGGTTTTCTGATAAAGGTGAAAAGGTTATAATTGATTTGGATGATTCTGAAGAGAGTGAGGAGGAGGATGATTCTGATGAGAGTGAAGAAAATGACTCTAGTGATGAAGATTTTGCAGAGGAGGAGGAGGTGGTGGAGAAGGAGAAAAAAGAGGGTTACAGAAAAGACTTCAATGTGGTGGAGGAATTAGTAAGAAAGGTGAAGAGTCAAAAAAGGGGAATTTCTGAGGGTAATGATGAGGAAGTAAATGTTGAGAATTGTTCATCTTCTGATAATGATGATGAGGAGATGGTGAGAGAGGGGAAGGATAAAAAGAGTGGAATTTCTGAGAGGAATAATGAGAAAGTAAATGTTGAGAATAGTCCATCTTATGATAATGATGAAGAAATGGTGAGAGAGGTGAAGCGTAAAAAAAGTGGAATTTTTAAGAGGAAATACGAGAAGGTAGAGAATGAGAATGTTCCATCTTCCACAAATATTGATGAGTTGGAGCATGCAGATCATGCTAGTGTTTCCTCCTGTATCATTGAGAAGAAGGGTAGTTCTTCTTCTAAACTGAATGGAGTATCAGAGACACTGAAACCAATGAGTGTGGATGTTGGAGTGAATGCCAAGTCAAAAGCCAAATCCAAAGAAAATGTTGGTGATTCTGATCGAGGAAAAGATCAATTTGTTAAAGGCTTAGATGTTGGAGGAGTTTCTTCAGTTCATAGAAAGCAAGAAAAGATGAATGAATCAGATAAACAGAAAACAATGGAGAACAAAAGAAGGGATTATAAAGGTAGAGCTAACATCTGTAATGGTGAGAAGAAGGAATCTATTGATACCAATGGTTTGAATCAAAGCGTCAAAAGCACACATTTTACGCGGAAGGAGTTGCGTTCACTCGAACTCCTTGTTAAATGCTATTGGGAAAGAAAGAATACCATTAACAATGATTCAATTGTGTTAGAGGATAACGACGATGGTGTTGGTCAGCAAGATACATGGCCACCACCAGTCTCTGTGGAGACACCTCGTGAACGGATATGGAGCCTTAAAAAGGTGGAAAAAGTAGAAAAGACCAAGGAGGAAGAGGAGGAGGAAGTGTTATGGGATGAATTTGATACAGCCCGTAGAGAATCTGACGCTGAATCCATGATTGGAAATTTAGGAGAAAACGGAGGTCCATCGTTCCGCTGTGAACATGATAGTTTTCTCGATGAAGAGATTGGTCTATTTTGCAAATTGTGTCATGAGGTTGTTACTGAGATCAAATATATCTCACCACCTGTGATTGATAGATTTCCCGGTGAAGGTTCAGGAAAAAAAGCATCATTTGATGGAGTAAATGTTTCACATGTTGATGGATCTCAGTTAAATGTTTCTGATAATGATTCGGAGACTAATTTCTCTCGCAATGAAGGCACAGTTTGGGACCTAATTCCTGGTGTGAAACAAAAATTATATCCTCATCAACAAGAAGGCTTTGAATTCATTTGGAAAAACATGGCAGGACACACTGAGCTTCAAAAGTTAAAGAATGCCGATCCTTCCAGCGAAGGTGGCTGTATTATTTCTCATGCTCCTGGAACCGGAAAGACAAGGCTGACCATAGTGTTTCTCAAGGCATATTTGAAAGCCTTTCCCAAATGCTTGCCGATTATTGTTGCTCCTGCTAGTATACTACTAACTTGGGAGGATGAATTCAAGAAATTGGACATCGGAGTTCCATTTCACAATTTAAACAATCCCGAGTTATCTGGTAAAGAGCATCCTGATGCGGTTGAAACATTTGATATGTCTAATGCACGGCATAATATTCATGAAACGCGGATGGCAAAACTGATTTCGTGGTTCAAAGAACCAAGCATTCTTGGAATCAGCTATAATTTGTTTGGGAAAAAATGCCAAGATAAGAGAAAGCATGAAAATGTGAATGAGAGAGAAGGAAACTGTGATATGCGAAAGGTTCTACTTAATTCTCCTGGGTTGTTAGTTCTAGACGAAGGACACACACCAAGAAATCAAAGAAGTCATATTTGGAAGGTGTTTTTGAAGCTTCAAACACAGAAGCGTATTATCCTTTCCGGAACTCCATTCCAGAACAATTTCTGGGAGCTTTACAGCACCTTAAGCTTAGTGAAGCCTTCTTTTCCTAACACAATACCGCCTGAGCTAAAAAGTTTTTGCCAAAATCAGGGACTTAAATCATCTAAAAAATGGAATTGGGAACCAGCGTTGCTCAACAAAACAAGAGACCCTTCTGATGATCAGATCAAGAAGTTTAAATTGCTAATGGATCCCTTTGTTCATGTGCACAAAGGCGCAATCCTTGAAAATAAGCTTCCTGGGTTAAGGGACAGTTTGGTGACTTTGAAGGCTGGTAGTTTGCAGAATGAAATTCTGAAGAGCATTAAACGTTCTCAGAACACAATATTTAACTTTGAACGTAAGGTAGCGTTGACATCTGTCCATCCATCGCTTTTCCTTGAATGTGCTCTTTCAGAAGAAGAAAAATCTGCTCTCGACAAGGATCAGCTGGAAAAGCTTAGACTGAACCCACATGAAGGTGTCAAAACAAAATTTTTGTTCGAGTTTGTTCGGCTATGTGATGCTTTTCACGAGAAAGTTCTTGTGTTCAGCCAATTCCATGCTCCTTTACAATTAATAAAAGACCAATTAAACTCAGCTTTTAAATGGTCTGAGGGAAAGGAAGTGCTGGTCATGTCTGGCGAGGATCCTCCAAAGGTCAAGCAATCCGTAATCCATAGCTTCAACGTTGAAAATTGCCAAGCAAAAGTTTTACTTGCATCTACAAAAGCTTGTTCTGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTTGTACTTCTGGATGTTGTATGGAATCCTTCGGTCGAAAGACAAGCTATCAGCCGAGCGTATAGGATTGGTCAGAAGAGAGTAGTATACACATACCATCTGCTCGCTGAAGGGACTACTGAGGAAGAAAAATATGGTAAACAGGCCGAAAAAGACCGGTTATCTGAGCTTGTTTTTTCAGCAAAAAATGCTGCCAATAATGGTGATAAGTCCAAGAGCTCTGCTGTGAACTTCGAAGATAGAGTTCTTGATGAGATGACTAAACACGAAAAGCTCAAAGGCATATTTGTTAAGTGCGTAGTACTGAGGAAGGAGCGAGATGTGGTCTGA 3630 0.395 MAGVSSRTRSKNVPLFGSLLLGGSSKRRKSDEEDKGLDYVSRSKKRKMNEEPFVVPADAEVVSIDDDEYEDVGQEGSEHSDDKMSKDGKFVDENCEREQDNPVSISSDEYGESDEEHFVDSDADNEEEEEEEEKKEDDAVKEGVKSDESGGIGRFSDKGEKVIIDLDDSEESEEEDDSDESEENDSSDEDFAEEEEVVEKEKKEGYRKDFNVVEELVRKVKSQKRGISEGNDEEVNVENCSSSDNDDEEMVREGKDKKSGISERNNEKVNVENSPSYDNDEEMVREVKRKKSGIFKRKYEKVENENVPSSTNIDELEHADHASVSSCIIEKKGSSSSKLNGVSETLKPMSVDVGVNAKSKAKSKENVGDSDRGKDQFVKGLDVGGVSSVHRKQEKMNESDKQKTMENKRRDYKGRANICNGEKKESIDTNGLNQSVKSTHFTRKELRSLELLVKCYWERKNTINNDSIVLEDNDDGVGQQDTWPPPVSVETPRERIWSLKKVEKVEKTKEEEEEEVLWDEFDTARRESDAESMIGNLGENGGPSFRCEHDSFLDEEIGLFCKLCHEVVTEIKYISPPVIDRFPGEGSGKKASFDGVNVSHVDGSQLNVSDNDSETNFSRNEGTVWDLIPGVKQKLYPHQQEGFEFIWKNMAGHTELQKLKNADPSSEGGCIISHAPGTGKTRLTIVFLKAYLKAFPKCLPIIVAPASILLTWEDEFKKLDIGVPFHNLNNPELSGKEHPDAVETFDMSNARHNIHETRMAKLISWFKEPSILGISYNLFGKKCQDKRKHENVNEREGNCDMRKVLLNSPGLLVLDEGHTPRNQRSHIWKVFLKLQTQKRIILSGTPFQNNFWELYSTLSLVKPSFPNTIPPELKSFCQNQGLKSSKKWNWEPALLNKTRDPSDDQIKKFKLLMDPFVHVHKGAILENKLPGLRDSLVTLKAGSLQNEILKSIKRSQNTIFNFERKVALTSVHPSLFLECALSEEEKSALDKDQLEKLRLNPHEGVKTKFLFEFVRLCDAFHEKVLVFSQFHAPLQLIKDQLNSAFKWSEGKEVLVMSGEDPPKVKQSVIHSFNVENCQAKVLLASTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKRVVYTYHLLAEGTTEEEKYGKQAEKDRLSELVFSAKNAANNGDKSKSSAVNFEDRVLDEMTKHEKLKGIFVKCVVLRKERDVV* 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2950 1209 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1012 1165 IPR001650 -
Mtr4g2950 1209 MobiDBLite consensus disorder prediction 61 75 - -
Mtr4g2950 1209 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 229 1208 - -
Mtr4g2950 1209 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 1 294 - -
Mtr4g2950 1209 MobiDBLite consensus disorder prediction 220 284 - -
Mtr4g2950 1209 Gene3D - 605 895 IPR038718 -
Mtr4g2950 1209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 807 1165 IPR027417 -
Mtr4g2950 1209 MobiDBLite consensus disorder prediction 1 205 - -
Mtr4g2950 1209 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 661 864 IPR014001 -
Mtr4g2950 1209 MobiDBLite consensus disorder prediction 388 409 - -
Mtr4g2950 1209 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 294 IPR044567 GO:0080188
Mtr4g2950 1209 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 229 1208 IPR044567 GO:0080188
Mtr4g2950 1209 Pfam Helicase conserved C-terminal domain 1019 1124 IPR001650 -
Mtr4g2950 1209 SMART ultradead3 631 876 IPR014001 -
Mtr4g2950 1209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 625 871 IPR027417 -
Mtr4g2950 1209 Pfam SNF2-related domain 645 951 IPR000330 GO:0005524|GO:0140658
Mtr4g2950 1209 CDD SF2_C_SNF 1006 1135 - -
Mtr4g2950 1209 MobiDBLite consensus disorder prediction 245 265 - -
Mtr4g2950 1209 MobiDBLite consensus disorder prediction 358 378 - -
Mtr4g2950 1209 MobiDBLite consensus disorder prediction 113 136 - -
Mtr4g2950 1209 MobiDBLite consensus disorder prediction 76 103 - -
Mtr4g2950 1209 Gene3D - 930 1198 IPR027417 -
Mtr4g2950 1209 MobiDBLite consensus disorder prediction 137 165 - -
Mtr4g2950 1209 MobiDBLite consensus disorder prediction 356 409 - -
Mtr4g2950 1209 MobiDBLite consensus disorder prediction 166 195 - -
Mtr4g2950 1209 MobiDBLite consensus disorder prediction 25 53 - -
Mtr4g2950 1209 SMART helicmild6 1035 1124 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2950 Mtr-Chr4 43204570 43209088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2950 1022 1154 RAD5 or RAD16-like Gene Family AT5G43530 40.602 1.80e-17 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr4g2950 SNF2_N 1.2e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2950 K10875 - gmx:100806733 813.913