Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2949 ATGGTTTGGTCGGCTTATTGGGAGGTTTATGGTTTTGATTGTTTGGAGACAGATCTGGTTTGGGTTGGTGCGCCTTCTTTTGGTGTTGTTGTTGTTCGCGCCGAAGGTTGGTTTGGTAATTGGTCTGTTGAGATCTCCAGGTTTCTAGTCATCTTGTCTGCCTACACTTTGTATTTGATGCTCGAAAGAGCTTTTATGCTTGCTGCTTTGTTCAGTTTTCAAAACTTTCTGTATGATTACCTCAAGAAGAAGGGATTGTCAAACACTGCTGAGATTTTCAAAAATGAAGCTCATGTTACCGGACATTTTCCCCCTGAATTTGATAAACAACCACATGGATTGTTGCATGATTTCTGGAGTTTATATAATGACAGTAAATCTAGGCAACAGATGCCCGGACCGTCCAGTCGCACATTAGCCGGTGTGCTAGATTCTTTGAGGAAAACTACCCCTCAAATAATTCTGGAAGGACATTCTATTCAAGAGCTTGCATGTATTTCAAGCGGTCAAAGTCTTTTGTCCTGCGATTTATCATCGGATGGAAAGATTGTAGCAAGTGGTGGGATTGGGAAGAAGCCTTTCATTTGCTACCTGGAAACTGGTCTTTCTGTTACGGCATTGGAGTCACATTTAGATACCATCTTCGAAGTTAGATTTCAACCAGGATCAACTGTGTTTGCAACCTCTTCTGCTGATAAAACAGTAAAATTATGGGATGCAAACAGTCCCGAGAGATCATTTTGCAATGTTGTTGGACATAATGGGACAGTAAGATCATTGGACTTTCACCCATTAGGAGGAGTTCTTTGCACGTCCGATACCTGTGATGTAATTAAAGTATGGGATCTCCATAAGAATGTCTTAGTTAACGAATTTAAGGCAGGAAGCCTAGTGAGATTTCAGCCTGGATCAGGGAAGCTTTTGGCAGTTGCTAATCGAAATGTTATTACCATAATTGATACTCCGACTATGGTTGTTATTGACCAACTTCAGGGACACGTCAAAGACATCAATTCCATATGTTTGGACGTCACTGGGAATATGATTGCCTCTGTCAGTGAAGATGAAGTACGTGTCTGGTCGGACAGACGATGCATATTCGAGTATCAATCAAACGGGAAGAGGTTTCAGTCTGTCATATTCCATCCTCGATACCCTAACGTCTTAGTTGTTGCTGGTTTTCAGTGCTTGGAATTGTTGATTCTTGAGACTGAGAAAAGACGTAATAAAGGAGGTGCCTCTGATGTATTAATTACTGGACTAGCAGCTACTACGGCGCGAAGTGAATTCAATATTGCATCAGCTAGCAGTGATTCTGTGGTGAAGATATGGAAATGA 1338 0.4148 MVWSAYWEVYGFDCLETDLVWVGAPSFGVVVVRAEGWFGNWSVEISRFLVILSAYTLYLMLERAFMLAALFSFQNFLYDYLKKKGLSNTAEIFKNEAHVTGHFPPEFDKQPHGLLHDFWSLYNDSKSRQQMPGPSSRTLAGVLDSLRKTTPQIILEGHSIQELACISSGQSLLSCDLSSDGKIVASGGIGKKPFICYLETGLSVTALESHLDTIFEVRFQPGSTVFATSSADKTVKLWDANSPERSFCNVVGHNGTVRSLDFHPLGGVLCTSDTCDVIKVWDLHKNVLVNEFKAGSLVRFQPGSGKLLAVANRNVITIIDTPTMVVIDQLQGHVKDINSICLDVTGNMIASVSEDEVRVWSDRRCIFEYQSNGKRFQSVIFHPRYPNVLVVAGFQCLELLILETEKRRNKGGASDVLITGLAATTARSEFNIASASSDSVVKIWK* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2949 445 Pfam LisH 78 97 IPR006594 GO:0005515
Mtr4g2949 445 SUPERFAMILY WD40 repeat-like 170 445 IPR036322 GO:0005515
Mtr4g2949 445 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 283 - -
Mtr4g2949 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 432 445 IPR001680 GO:0005515
Mtr4g2949 445 SMART WD40_4 243 282 IPR001680 GO:0005515
Mtr4g2949 445 SMART WD40_4 362 403 IPR001680 GO:0005515
Mtr4g2949 445 SMART WD40_4 159 197 IPR001680 GO:0005515
Mtr4g2949 445 SMART WD40_4 404 445 IPR001680 GO:0005515
Mtr4g2949 445 SMART WD40_4 200 239 IPR001680 GO:0005515
Mtr4g2949 445 SMART WD40_4 323 361 IPR001680 GO:0005515
Mtr4g2949 445 ProSiteProfiles LIS1 homology (LisH) motif profile. 78 101 IPR006594 GO:0005515
Mtr4g2949 445 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 207 242 - -
Mtr4g2949 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 248 IPR001680 GO:0005515
Mtr4g2949 445 Gene3D - 300 445 IPR015943 GO:0005515
Mtr4g2949 445 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG-LIKE ISOFORM X1 73 445 - -
Mtr4g2949 445 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 73 445 IPR044716 GO:0003714
Mtr4g2949 445 Pfam WD domain, G-beta repeat 329 361 IPR001680 GO:0005515
Mtr4g2949 445 Pfam WD domain, G-beta repeat 206 239 IPR001680 GO:0005515
Mtr4g2949 445 Pfam WD domain, G-beta repeat 251 282 IPR001680 GO:0005515
Mtr4g2949 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 291 IPR001680 GO:0005515
Mtr4g2949 445 Gene3D - 154 299 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2949 Mtr-Chr4 43195032 43203107 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2949 115 364 U-box Gene Family AT2G33340 24.528 1.52e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2949 - - mtr:MTR_4g088660 424.091