Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2948 ATGGATTCAAAAAATCCCAAAGAAGAACTTTTTCAAAACTTTCTGTGTGATTACTTCAAGAAGAAGGGATTGTCAAACACTGCTAAGATTTTCAAAAATGAAGCTCGAGTTTCCGGACATATTCTCCCTGAATTTGATAAACAACCACATGGATTGTTGTGCGACTTCTGGAATTTAAACTATGGAACTTCCAGTGAGAGTCAGGCCCCAAAAGTTGGTGCTACAATGGACAATACCCCTCAAATAATTCGGGATAAATATTCTATTCAACACCATGCAAGTTTTCTAAGCAATCAGAAGCTTATGTCCTGCGATTTTTCATCTGATGGAAAGATTATAGCAAGTGGTGGGATTGGGGCAAGTGATGAGAATGGGGCGAAGCCTTTCATTTGCTACGTGGAAAGTCGTGCTTCTGTTACTGCATTAGAGTCAGATTTAGATATCATCTTAGAAGTTAGATTTCAACCAAAATCAACTAGATTTGCAACAACTTCTCGTGATGGAACAGTAAAACTATGGGATGCAAAAAAACCTGAGAGAGCATTGTTCAATTATGTTGTACATAATGGAAAAGTAAGATCATTGGACTTCCACCCAACAGAAGAAATTATTTGCTCATCTGATAGCAATGTAATTAAAGTATGGGATCTTAAACAGCATGCCACGATTAAAGAATTGCAGGCAGGTGGAAGCCTAGTGAGATTTCAGCCTGGATCTGGGAGGCATTTGGCAGTTGCTAATCAAAATGTTATCACCATACATGATTTAAAGGATCCCAATGTTCGGATCAATCTTCAGGGACACACCAAAGACATCTATTCCATGTGTTGGGATGTCACTGGTAAAATGATTGCCTCTGTCACTGAAGATGATGTACGTGTTTGGTCGGTTTTTATGGTGAAACAATGCATGTATAAGTATCCATCAAATGGGAACAGGTTTCAGTCTGTCATATTCCATCCTCGATACCCTGGCGTCTTAGTTATTGGTGGTTTTCAGTGCTTGGAATGGTTGATTATTGAGAACGGGCAAAGATTTAATAAAGGAAGTGCCTCTGATATATCAATTACTGGACTAGCAGCTTCAACGGCGCAAAGTGAATTCCATATTGCATCCGCTAGCACTGATTCTATGGTGAAGCTATGGAAATGA 1152 0.3915 MDSKNPKEELFQNFLCDYFKKKGLSNTAKIFKNEARVSGHILPEFDKQPHGLLCDFWNLNYGTSSESQAPKVGATMDNTPQIIRDKYSIQHHASFLSNQKLMSCDFSSDGKIIASGGIGASDENGAKPFICYVESRASVTALESDLDIILEVRFQPKSTRFATTSRDGTVKLWDAKKPERALFNYVVHNGKVRSLDFHPTEEIICSSDSNVIKVWDLKQHATIKELQAGGSLVRFQPGSGRHLAVANQNVITIHDLKDPNVRINLQGHTKDIYSMCWDVTGKMIASVTEDDVRVWSVFMVKQCMYKYPSNGNRFQSVIFHPRYPGVLVIGGFQCLEWLIIENGQRFNKGSASDISITGLAASTAQSEFHIASASTDSMVKLWK* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2948 383 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 174 - -
Mtr4g2948 383 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 225 IPR001680 GO:0005515
Mtr4g2948 383 ProSiteProfiles LIS1 homology (LisH) motif profile. 7 39 IPR006594 GO:0005515
Mtr4g2948 383 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG-LIKE ISOFORM X1 11 383 - -
Mtr4g2948 383 Pfam WD domain, G-beta repeat 265 296 IPR001680 GO:0005515
Mtr4g2948 383 Pfam WD domain, G-beta repeat 183 216 IPR001680 GO:0005515
Mtr4g2948 383 Pfam WD domain, G-beta repeat 149 174 IPR001680 GO:0005515
Mtr4g2948 383 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Mtr4g2948 383 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Mtr4g2948 383 PRINTS G protein beta WD-40 repeat signature 203 217 IPR020472 -
Mtr4g2948 383 PRINTS G protein beta WD-40 repeat signature 370 383 IPR020472 -
Mtr4g2948 383 SMART WD40_4 342 383 IPR001680 GO:0005515
Mtr4g2948 383 SMART WD40_4 178 216 IPR001680 GO:0005515
Mtr4g2948 383 SMART WD40_4 88 122 IPR001680 GO:0005515
Mtr4g2948 383 SMART WD40_4 135 174 IPR001680 GO:0005515
Mtr4g2948 383 SMART WD40_4 258 296 IPR001680 GO:0005515
Mtr4g2948 383 Gene3D - 231 383 IPR015943 GO:0005515
Mtr4g2948 383 Gene3D - 56 230 IPR015943 GO:0005515
Mtr4g2948 383 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 11 383 IPR044716 GO:0003714
Mtr4g2948 383 ProSiteProfiles Trp-Asp (WD) repeats profile. 370 383 IPR001680 GO:0005515
Mtr4g2948 383 SUPERFAMILY WD40 repeat-like 95 383 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2948 Mtr-Chr4 43188245 43190685 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2948 68 321 U-box Gene Family AT2G33340 22.053 1.26e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2948 - - mtr:MTR_4g088660 419.853