Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2943 ATGAAGTTTAACGTTGCGAATCCAACCACTGGATGTCAGAAGAAGCTTGAAATCGATGATGACATGAAGCTTCGTGCTTTCTGGGACAAGAGGATCTCACAGGAAGTCCTTGGCGATGCCTTGGGAGAGGAATTCAAGGGTTACGTCTTCAAAATTACTGGTGGGTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGTTGACACCTGGCCGTGTTAGGCTCTTGCTCCATAGAGGAACTCCTTGTTTCCGTGGACATGGAAGGCGCAATGGAGAGCGAAGAAGGAAGTCTGTTCGTGGATGCATTGTCAGCCCTGACCTCTCTGTTTTGAACTTGGTTATTGTGAAGAAAGGTGATAATGATCTTCCAGGGCTTACTGATGTTGAGAAGCCAAGGATGAGAGGTCCTAAGAGAGCATCCAAAATCCGTAAGCTGTTCAACCTGTCAAAGGATGATGATGTGCGAAAATATGTTAACACCTACCGTAGAACTTTCACCACCAAGGATGGGAAGAAGGTTAGCAAAGCTCCAAAGATACAGCGATTGGTCACTCCTTTGACACTCCAAAGGAAGCGAGCAAGAATTGCAGACAAGAAGAAGAGAATTGCTAAGGCAAAATCAGAGGCAGCAGATTATCAGAAACTCCTTGCATCCAGATTGAAGGAGCAGAGGGAACGCCGAAGTGAGAGCTTGGCTAAGAAGAGGTCCAGACTATCGAGTGCTAAGCCATCTGCCACAGCATAA 747 0.4659 MKFNVANPTTGCQKKLEIDDDMKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKDGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAADYQKLLASRLKEQRERRSESLAKKRSRLSSAKPSATA* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2943 248 PIRSF RPS6e 1 248 IPR014401 GO:0003735|GO:0005840|GO:0006412
Mtr4g2943 248 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Mtr4g2943 248 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Mtr4g2943 248 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Mtr4g2943 248 Gene3D - 133 234 - -
Mtr4g2943 248 Coils Coil 189 216 - -
Mtr4g2943 248 PANTHER 40S RIBOSOMAL PROTEIN S6 1 246 - -
Mtr4g2943 248 PANTHER 40S RIBOSOMAL PROTEIN S6 1 246 IPR001377 GO:0003735|GO:0005840|GO:0006412
Mtr4g2943 248 MobiDBLite consensus disorder prediction 220 248 - -
Mtr4g2943 248 MobiDBLite consensus disorder prediction 220 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2943 Mtr-Chr4 43157599 43160538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2943 1 247 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 73.896 7.44e-121 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2943 K02991 - gmx:100786559 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2943 4 43157599 43160538 Mtr2g0388 2 3907869 3911163 PCT