Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2941 ATGGAGACAAGAAGGTCAGAGGGAAAAAGAAGTTTGAAGTACAAAGAGGATCATGAGGAAGAAGAAGAAGAGGAAGAGGATACGGATTTTGAAGAGGAAGAGGATGGTAGAAGGAAGAGGGTAGTGACAGATCTCTATAGCAAGAGAAGTTCCAAAAAAGCTGGAAGCTCAAACATTCCACCTTGTTGTCAAGTGGAGAATTGTGATGCTGATCTTAGTGAAGCTAAGCAATATCACCGGAGACATAAGGTTTGTGAGTATCATGCCAAAGCACCTGCCGTACACATTGCAGGGTTGCAGCAAAGGTTTTGTCAGCAATGTAGCAGATTCCATGGACTATCTGAATTTGATGACGCAAAAAGAAGTTGCAGAAGGCGTTTGGCCGGGCATAATGAGAGGCGTCGCAAAAGTGCAATTGACTATCAAGGAGAATGA 435 0.4345 METRRSEGKRSLKYKEDHEEEEEEEEDTDFEEEEDGRRKRVVTDLYSKRSSKKAGSSNIPPCCQVENCDADLSEAKQYHRRHKVCEYHAKAPAVHIAGLQQRFCQQCSRFHGLSEFDDAKRSCRRRLAGHNERRRKSAIDYQGE* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2941 144 Gene3D - 53 124 IPR036893 GO:0003677|GO:0005634
Mtr4g2941 144 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 14 138 IPR044817 GO:0003677
Mtr4g2941 144 SUPERFAMILY SBT domain 60 141 IPR036893 GO:0003677|GO:0005634
Mtr4g2941 144 MobiDBLite consensus disorder prediction 33 47 - -
Mtr4g2941 144 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 14 138 - -
Mtr4g2941 144 MobiDBLite consensus disorder prediction 1 59 - -
Mtr4g2941 144 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
Mtr4g2941 144 Pfam SBP domain 63 136 IPR004333 GO:0003677
Mtr4g2941 144 MobiDBLite consensus disorder prediction 1 17 - -
Mtr4g2941 144 MobiDBLite consensus disorder prediction 18 32 - -
Mtr4g2941 144 PIRSF SBP 1 144 IPR017238 GO:0003677|GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2941 Mtr-Chr4 43117075 43121647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2941 1 140 SBP-box Gene Family AT2G33810 59.859 4.97e-45 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr4g2941 SBP 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2941 - - gmx:100527199 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2941 4 43117075 43121647 Mtr4g2941 4 43117075 43121647 ECH
Mtr2g0394 2 3983370 3986318 Mtr4g2941 4 43117075 43121647 ECH
Mtr2g2608 2 39079252 39082199 Mtr4g2941 4 43117075 43121647 ECH
Mtr4g2941 4 43117075 43121647 Mtr2g0394 2 3983370 3986318 PCT