Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2937 ATGCCGGCACAGAAGCGTTCTTTCGAAGAAGCTCTCGAAGAGAATGAAGAGTCTGAGAATGAGATAAACAACACTTCGCAACCTAACGATGAACTCGAATCGGATCAAAGACATTCATCTGAAAACGAAGAAGATGAAGATGAGGAAGAAGATGAAGATGATGACGAAGAATATGTGGCTATAAAATTGTCAGATGTACGCAAGGAAGTTCAGTGTCCTATCTGCCTCGGCATCATTCGAAAAACAAGAACCGTAATGGAGTGCTTGCATCGCTTTTGCAGAGAGTGCATAGACAAATCCATGCGTCTAGGTAACAATGAATGTCCTGCTTGCCGAACACATTGTGCTAGCCGACGCTCACTGAGAGACGACCCAAACTATGATGCTTTGATTGCTGCTATCTATCCAGATATTGACAAGTATGAGGAAGAGGAATTGGCTTTGCATGAGGATGAGATGACTCGGCATAAGCAGTTCCAAGCATCCATTGCTCAAACGCTACAACGGCAATCAGAAGCATTGAGTAAGAAACGAAATGCCAAAGCAACAGCAGCGGCTTTTATGAGGAGATCAAAAGGAAACTATCGAACTTCACATCTGAGGCGTCGAAGAAACATTAGAAATGCTGGCGACTTTCAGGTATCAAGTGACAACAATGGTATGAATGATAATGATGGGGAAAAGGACTCATCTTCAGACGACGGACAGACAGAAACCCAGCCAAGAAGATGCAAAAAAGGCGCTGAACAAGAAACTCAATTTCCTCGGCATTCTGCCTCTACTGATCCAGATGGAATTGGTGATGAAACTCCTCCAGAAGTACATAGAGAAATCATAAGTGCATCTGGTACACTTTCCTGGGGGAAAAATGGTCACCGGAGTCACAGCCGCGTCAATGGAAAGAATGCAAAAAACAACCGCATCTCCAAATTGGTTGAACATCTCAGTAGCTTGGCAGCAAATGGTTATGAGCTGCCTGTCTTTCTCAAGCTTGTCTCGTTTGATGAGCAAAGACTGCCAAATTTGGAGGAGTCATGCATTACTTGCAAGCCTACTATGTCAGTCAAGGAACTTTGCAAGCATGTTGCAAATGAAACTGCACTGCCTGCCAATGAAGTTGAATTGTTGTTGGTACTAAAGCCACGAGCGAGCATTGTAGGAGGTGAAAGTACCATTGGTCCAGACAGAGATAATTTACGTGTTCTAGAAGACCAAGAAACATTGGCTGAATTGCTGGGAGATTATGAAAATACCAGCTATGGTTATCTGGTCATGGCTTACAAGAGGAAGTTGCAGAATTCAGACATTGTTGGGTTAAGCTGA 1323 0.4354 MPAQKRSFEEALEENEESENEINNTSQPNDELESDQRHSSENEEDEDEEEDEDDDEEYVAIKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAAIYPDIDKYEEEELALHEDEMTRHKQFQASIAQTLQRQSEALSKKRNAKATAAAFMRRSKGNYRTSHLRRRRNIRNAGDFQVSSDNNGMNDNDGEKDSSSDDGQTETQPRRCKKGAEQETQFPRHSASTDPDGIGDETPPEVHREIISASGTLSWGKNGHRSHSRVNGKNAKNNRISKLVEHLSSLAANGYELPVFLKLVSFDEQRLPNLEESCITCKPTMSVKELCKHVANETALPANEVELLLVLKPRASIVGGESTIGPDRDNLRVLEDQETLAELLGDYENTSYGYLVMAYKRKLQNSDIVGLS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2937 440 PANTHER OS11G0578200 PROTEIN 1 432 - -
Mtr4g2937 440 MobiDBLite consensus disorder prediction 40 56 - -
Mtr4g2937 440 Coils Coil 1 21 - -
Mtr4g2937 440 SMART ring_2 72 111 IPR001841 -
Mtr4g2937 440 MobiDBLite consensus disorder prediction 169 302 - -
Mtr4g2937 440 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Mtr4g2937 440 MobiDBLite consensus disorder prediction 1 56 - -
Mtr4g2937 440 CDD RING-HC_RING1_like 72 112 - -
Mtr4g2937 440 MobiDBLite consensus disorder prediction 222 252 - -
Mtr4g2937 440 PANTHER OS11G0578200 PROTEIN 1 432 IPR044592 -
Mtr4g2937 440 Pfam Zinc finger, C3HC4 type (RING finger) 71 111 - -
Mtr4g2937 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 140 IPR013083 -
Mtr4g2937 440 SUPERFAMILY RING/U-box 71 126 - -
Mtr4g2937 440 ProSiteProfiles Zinc finger RING-type profile. 72 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2937 Mtr-Chr4 43079411 43083992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2937 65 135 C3H Transcription Factor Family AT3G23060 35.135 7.15e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2937 K10695 - zju:107425269 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2937 4 43079411 43083992 Mtr4g2937 4 43079411 43083992 ECH