Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2932 ATGATAATGTAGATGCAAATCTTTGTGAAGACTCTCACAGGAAAGACAATCACCCTTGAGGTGGAGAGCTCCGATACAATTGACAATGTTAAGGCCAAGATTCAAGACAAAGAAGGGATCCCTCCAGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTGGAGGATAGGCGTACCCTTGCTGATTATAACATCCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTTCGTGGTGGTATGCAAATATTTGTGAAGACTCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTTAAGGCCAAGATACAAGACAAAGAGGGTATCCCACCAGACCAGCAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCAGAACATTGGCCGATTATAACATCCAGAAAGAGTCAACTCTTCATCTCGTTTTGCGACTTCGTGGTGGTATGCAGATTTTTGTAAAGACCCTTACAGGAAAGACAATTACTTTGGAGGTAGAGAGCTCGGACACGATTGACAATGTAAAGGCTAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCAGAACTCTTGCTGATTACAACATCCAGAAAGAGTCAACTCTTCACCTTGTCTTGCGTCTTCGTGGTGGTATGCAGATTTTTGTAAAGACCCTTACAGGAAAGACAATTACTTTGGAGGTTGAGAGCTCGGACACGATTGACAATGTAAAGGCTAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCAGAACTCTTGCTGATTACAACATCCAGAAAGAGTCAACTCTTCACCTTGTCTTGCGTCTTCGTGGTGGTATGCAGATTTTTGTAAAGACCCTTACAGGAAAGACAATTACTTTGGAGGTTGAGAGCTCGGACACGATTGACAATGTAAAGGCTAAGATTCAGGACAAGGAGGGCACCCCAGACCAGCAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACTCTTGCTGATTACAACATCCAGAAAGAGTCGACTCTTCACCTTGTCTTGCGTCTTCGCGGTGGTATGCAGATTTTTGTTAAGACACTCACAGGCAAAACAATTACTTTGGAGGTAGAGAGCTCGGACACTATTGATAATGTCAAGGCCAAGATACAGGACAAGGAGGGTATCCCCCCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGGACATTGGCTGATTATAACATTCAGAAGGAATCAACCCTTCATCTTGTTCTTCGTTTGAGGGGAGGCATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATTACATTGGAGGTGGAAAGCTCAGACACCATTGATAATGTTAAGGCAAAAATACAGGATAAGGAGGGAATCCCACCTGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTTGAAGATGGCCGGACTTTGGCCGATTACAACATTCAGAAAGAGTCTACCCTTCACCTTGTCCTTCGTCTGAGGGGAGGTATGCAGATCTTTGTGAAGACGTTGACCGGTAAGACCATCACCTTAGAGGTAGAAAGTTCAGACACAATTGATAATGTGAAGGCAAAAATCCAGGACAAGGAAGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTTTTGCGTCTTCGTGGTGGGATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGTACCCTTGCTGATTATAACATCCAAAAGGAATCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATATTTGTGAAGACTCTCACTGGAAAGACGATCACCCTTGAGGTGGAGAGTTCTGATACCATAGACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGTACCCTTGCTGATTATAACATCCAAAAGGAATCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATATTTGTGAAGACTCTCACTGGAAAGACGATCACCCTTGAGGTGGAGAGTTCTGATACCATTGACAATGTTAAGGCCAAGATACAAGACAAAGAGGGTATCCCACCAGACCAGCAGAGGCTCATCTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACCTTGGCTGATTACAACATCCAGAAGGAGTCAACTCTCCATCTTGTGCTGCGACTTCGCGGTGGTATGCAGATTTTTGTTAAGACCCTTACAGGAAAGACTATTACTTTGGAGGTAGAGAGCTCGGACACAATTGACAATGTGAAGGCCAAGATACAAGACAAGGAGGGCATCCCCCCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAACTTGAAGATGGCCGAACTCTAGCTGATTATAACATCCAGAAAGAGTCGACTCTTCATCTTGTCTTGCGACTTCGTGGTGGTATGCAGATTTTTGTTAAGACCCTAACTGGAAAAACGATTACTTTGGAGGTGGAGAGCTCAGACACAATTGACAATGTAAAGGCTAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAAAGGTTGATCTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACCTTGGCAGATTATAACATCCAGAAAGAATCCACTCTTCATCTTGTCCTTCGTTTGAGGGGAGGCATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATTACATTGGAGGTGGAAAGCTCAGACACCATCGATAATGTTAAGGCAAAAATACAGGATAAGGAGGGAATCCCACCTGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTTGAAGATGGCCGGACTTTGGCCGATTACAACATTCAGAAAGAGTCTACCCTTCACCTTGTCCTTCGTCTGAGGGGAGGTATGCAGATCTTTGTGAAGACGTTGACCGGTAAGACCATCACCTTAGAGGTAGAAAGTTCAGACACAATTGATAATGTGAAGGCAAAAATCCAGGACAAGGAAGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTTTTGCGTCTTCGTGGTGGATTTTAA 3435 0.4582 MIM*MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDRRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGTPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2932 1143 ProSitePatterns Ubiquitin domain signature. 106 131 IPR019954 -
Mtr4g2932 1143 SUPERFAMILY Ubiquitin-like 762 838 IPR029071 -
Mtr4g2932 1143 Gene3D - 915 990 - -
Mtr4g2932 1143 Gene3D - 991 1066 - -
Mtr4g2932 1143 Gene3D - 459 534 - -
Mtr4g2932 1143 Gene3D - 611 687 - -
Mtr4g2932 1143 Gene3D - 763 838 - -
Mtr4g2932 1143 Gene3D - 308 382 - -
Mtr4g2932 1143 Gene3D - 157 231 - -
Mtr4g2932 1143 Gene3D - 2 79 - -
Mtr4g2932 1143 Gene3D - 232 307 - -
Mtr4g2932 1143 Gene3D - 535 610 - -
Mtr4g2932 1143 Gene3D - 688 762 - -
Mtr4g2932 1143 Gene3D - 1067 1143 - -
Mtr4g2932 1143 Gene3D - 839 914 - -
Mtr4g2932 1143 Gene3D - 80 156 - -
Mtr4g2932 1143 Gene3D - 383 458 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 815 1045 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 207 437 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 1044 1142 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 511 740 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 895 1121 - -
Mtr4g2932 1143 SUPERFAMILY Ubiquitin-like 458 534 IPR029071 -
Mtr4g2932 1143 ProSitePatterns Ubiquitin domain signature. 713 738 IPR019954 -
Mtr4g2932 1143 CDD Ubl_ubiquitin 915 990 - -
Mtr4g2932 1143 CDD Ubl_ubiquitin 156 231 - -
Mtr4g2932 1143 ProSitePatterns Ubiquitin domain signature. 1093 1118 IPR019954 -
Mtr4g2932 1143 PANTHER UBIQUITIN 458 665 - -
Mtr4g2932 1143 ProSitePatterns Ubiquitin domain signature. 789 814 IPR019954 -
Mtr4g2932 1143 ProSitePatterns Ubiquitin domain signature. 409 434 IPR019954 -
Mtr4g2932 1143 PANTHER UBIQUITIN 13 665 893 - -
Mtr4g2932 1143 SUPERFAMILY Ubiquitin-like 914 990 IPR029071 -
Mtr4g2932 1143 SUPERFAMILY Ubiquitin-like 154 231 IPR029071 -
Mtr4g2932 1143 CDD Ubl_ubiquitin 611 686 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 739 969 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 309 513 - -
Mtr4g2932 1143 SUPERFAMILY Ubiquitin-like 79 155 IPR029071 -
Mtr4g2932 1143 PANTHER UBIQUITIN 13 739 969 - -
Mtr4g2932 1143 ProSiteProfiles Ubiquitin domain profile. 611 686 IPR000626 GO:0005515
Mtr4g2932 1143 CDD Ubl_ubiquitin 232 307 - -
Mtr4g2932 1143 ProSitePatterns Ubiquitin domain signature. 1017 1042 IPR019954 -
Mtr4g2932 1143 Pfam Ubiquitin family 765 836 IPR000626 GO:0005515
Mtr4g2932 1143 Pfam Ubiquitin family 6 77 IPR000626 GO:0005515
Mtr4g2932 1143 Pfam Ubiquitin family 234 305 IPR000626 GO:0005515
Mtr4g2932 1143 Pfam Ubiquitin family 841 912 IPR000626 GO:0005515
Mtr4g2932 1143 Pfam Ubiquitin family 158 229 IPR000626 GO:0005515
Mtr4g2932 1143 Pfam Ubiquitin family 310 380 IPR000626 GO:0005515
Mtr4g2932 1143 Pfam Ubiquitin family 1069 1140 IPR000626 GO:0005515
Mtr4g2932 1143 Pfam Ubiquitin family 537 608 IPR000626 GO:0005515
Mtr4g2932 1143 Pfam Ubiquitin family 82 153 IPR000626 GO:0005515
Mtr4g2932 1143 Pfam Ubiquitin family 385 456 IPR000626 GO:0005515
Mtr4g2932 1143 Pfam Ubiquitin family 917 988 IPR000626 GO:0005515
Mtr4g2932 1143 Pfam Ubiquitin family 613 684 IPR000626 GO:0005515
Mtr4g2932 1143 Pfam Ubiquitin family 461 532 IPR000626 GO:0005515
Mtr4g2932 1143 Pfam Ubiquitin family 993 1064 IPR000626 GO:0005515
Mtr4g2932 1143 Pfam Ubiquitin family 689 760 IPR000626 GO:0005515
Mtr4g2932 1143 CDD Ubl_ubiquitin 839 914 - -
Mtr4g2932 1143 SUPERFAMILY Ubiquitin-like 231 307 IPR029071 -
Mtr4g2932 1143 SUPERFAMILY Ubiquitin-like 306 382 IPR029071 -
Mtr4g2932 1143 ProSiteProfiles Ubiquitin domain profile. 459 534 IPR000626 GO:0005515
Mtr4g2932 1143 ProSitePatterns Ubiquitin domain signature. 30 55 IPR019954 -
Mtr4g2932 1143 SUPERFAMILY Ubiquitin-like 609 686 IPR029071 -
Mtr4g2932 1143 SUPERFAMILY Ubiquitin-like 534 610 IPR029071 -
Mtr4g2932 1143 ProSiteProfiles Ubiquitin domain profile. 1067 1142 IPR000626 GO:0005515
Mtr4g2932 1143 CDD Ubl_ubiquitin 535 610 - -
Mtr4g2932 1143 ProSitePatterns Ubiquitin domain signature. 485 510 IPR019954 -
Mtr4g2932 1143 ProSiteProfiles Ubiquitin domain profile. 4 79 IPR000626 GO:0005515
Mtr4g2932 1143 PANTHER UBIQUITIN 665 893 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 586 817 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 156 344 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 3 210 - -
Mtr4g2932 1143 ProSiteProfiles Ubiquitin domain profile. 763 838 IPR000626 GO:0005515
Mtr4g2932 1143 PANTHER UBIQUITIN 79 286 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 377 589 - -
Mtr4g2932 1143 ProSiteProfiles Ubiquitin domain profile. 915 990 IPR000626 GO:0005515
Mtr4g2932 1143 PRINTS Ubiquitin signature 90 110 IPR019956 -
Mtr4g2932 1143 PRINTS Ubiquitin signature 111 131 IPR019956 -
Mtr4g2932 1143 PRINTS Ubiquitin signature 132 153 IPR019956 -
Mtr4g2932 1143 CDD Ubl_ubiquitin 763 838 - -
Mtr4g2932 1143 ProSiteProfiles Ubiquitin domain profile. 80 155 IPR000626 GO:0005515
Mtr4g2932 1143 SUPERFAMILY Ubiquitin-like 838 914 IPR029071 -
Mtr4g2932 1143 CDD Ubl_ubiquitin 4 79 - -
Mtr4g2932 1143 CDD Ubl_ubiquitin 1067 1142 - -
Mtr4g2932 1143 ProSiteProfiles Ubiquitin domain profile. 232 307 IPR000626 GO:0005515
Mtr4g2932 1143 ProSiteProfiles Ubiquitin domain profile. 156 231 IPR000626 GO:0005515
Mtr4g2932 1143 PANTHER UBIQUITIN 13 309 513 - -
Mtr4g2932 1143 ProSitePatterns Ubiquitin domain signature. 258 283 IPR019954 -
Mtr4g2932 1143 CDD Ubl_ubiquitin 459 534 - -
Mtr4g2932 1143 SUPERFAMILY Ubiquitin-like 989 1066 IPR029071 -
Mtr4g2932 1143 SUPERFAMILY Ubiquitin-like 1066 1142 IPR029071 -
Mtr4g2932 1143 ProSiteProfiles Ubiquitin domain profile. 308 382 IPR000626 GO:0005515
Mtr4g2932 1143 PANTHER UBIQUITIN 13 815 1045 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 13 207 437 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 13 1044 1142 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 13 586 817 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 13 377 589 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 13 156 344 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 13 895 1121 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 13 3 210 - -
Mtr4g2932 1143 ProSitePatterns Ubiquitin domain signature. 561 586 IPR019954 -
Mtr4g2932 1143 ProSitePatterns Ubiquitin domain signature. 941 966 IPR019954 -
Mtr4g2932 1143 ProSiteProfiles Ubiquitin domain profile. 535 610 IPR000626 GO:0005515
Mtr4g2932 1143 SUPERFAMILY Ubiquitin-like 686 762 IPR029071 -
Mtr4g2932 1143 PANTHER UBIQUITIN 13 511 740 - -
Mtr4g2932 1143 ProSiteProfiles Ubiquitin domain profile. 687 762 IPR000626 GO:0005515
Mtr4g2932 1143 ProSitePatterns Ubiquitin domain signature. 637 662 IPR019954 -
Mtr4g2932 1143 CDD Ubl_ubiquitin 991 1066 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 13 79 286 - -
Mtr4g2932 1143 PANTHER UBIQUITIN 13 458 665 - -
Mtr4g2932 1143 SUPERFAMILY Ubiquitin-like 382 458 IPR029071 -
Mtr4g2932 1143 SMART ubq_7 915 986 IPR000626 GO:0005515
Mtr4g2932 1143 SMART ubq_7 687 758 IPR000626 GO:0005515
Mtr4g2932 1143 SMART ubq_7 1067 1138 IPR000626 GO:0005515
Mtr4g2932 1143 SMART ubq_7 459 530 IPR000626 GO:0005515
Mtr4g2932 1143 SMART ubq_7 4 75 IPR000626 GO:0005515
Mtr4g2932 1143 SMART ubq_7 839 910 IPR000626 GO:0005515
Mtr4g2932 1143 SMART ubq_7 232 303 IPR000626 GO:0005515
Mtr4g2932 1143 SMART ubq_7 611 682 IPR000626 GO:0005515
Mtr4g2932 1143 SMART ubq_7 991 1062 IPR000626 GO:0005515
Mtr4g2932 1143 SMART ubq_7 80 151 IPR000626 GO:0005515
Mtr4g2932 1143 SMART ubq_7 383 454 IPR000626 GO:0005515
Mtr4g2932 1143 SMART ubq_7 156 227 IPR000626 GO:0005515
Mtr4g2932 1143 SMART ubq_7 763 834 IPR000626 GO:0005515
Mtr4g2932 1143 SMART ubq_7 308 378 IPR000626 GO:0005515
Mtr4g2932 1143 SMART ubq_7 535 606 IPR000626 GO:0005515
Mtr4g2932 1143 SUPERFAMILY Ubiquitin-like 3 79 IPR029071 -
Mtr4g2932 1143 ProSiteProfiles Ubiquitin domain profile. 383 458 IPR000626 GO:0005515
Mtr4g2932 1143 CDD Ubl_ubiquitin 80 155 - -
Mtr4g2932 1143 CDD Ubl_ubiquitin 383 458 - -
Mtr4g2932 1143 CDD Ubl_ubiquitin 308 382 - -
Mtr4g2932 1143 ProSiteProfiles Ubiquitin domain profile. 839 914 IPR000626 GO:0005515
Mtr4g2932 1143 ProSitePatterns Ubiquitin domain signature. 865 890 IPR019954 -
Mtr4g2932 1143 ProSitePatterns Ubiquitin domain signature. 182 207 IPR019954 -
Mtr4g2932 1143 CDD Ubl_ubiquitin 687 762 - -
Mtr4g2932 1143 ProSiteProfiles Ubiquitin domain profile. 991 1066 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2932 Mtr-Chr4 43043408 43053884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2932 915 991 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 4.26e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2932 K08770 - pmum:103342112 2170.97