Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2928 ATGGATTCTGAGTTCTGGACCTCTCGTCTTGCTGCCGCTAAACGCCACTATGCGCTTCAACATAACCACCCAACTTCTCATTTAGATCGGTTGGGAATAGATGATTTTGATGTCGAAGAAGAGGTGAGACCAGATTTCCCTTGTCCATATTGTTATGAAGAGTTTGACATAGGATCTTTGTGTTCTCATCTTGAAGATGAACATTCATGTGAATCAAGAGTCACGATTTGTCCTGTATGCTCAGTTAAAGTTGCACGCGACATGTTGAGCCACATAACGCTGCAACACGGACACCTGTTTAAGATACAGAGAAGGCGCAGGTTAAGAAGAGTTGCTATTCCGAACAGTCAGACGTTGTCTCTTTTAGGTCGAGATCTCCGTGAAGCTCATTTACAGGTGCTTCTTAATGGTGGTGGTGGATACCGGTCGCACAGTAACACAGTAACCAATGCGTCTGCTGATCCATTCCTATCCTCTTTTATTTTGAATTACCCTGCATGCGAAGCAGAAGAAATCTCTAAATCTGTGGTAACAAGTGCTGAAGATTCTTCTACAAAGAATACAACAACACCTGTACAGCATATTTGGAAATCAAGTTTTGATCCGTCGTTGAGTATTGAAGAGCGGGAGAAAAGAATGAGACAAGCTGCTGGGAGGTCTAGTTTTGTGCAGGATTTGTTTCTCTCAACCTTGTTAGGCGACTAA 705 0.4298 MDSEFWTSRLAAAKRHYALQHNHPTSHLDRLGIDDFDVEEEVRPDFPCPYCYEEFDIGSLCSHLEDEHSCESRVTICPVCSVKVARDMLSHITLQHGHLFKIQRRRRLRRVAIPNSQTLSLLGRDLREAHLQVLLNGGGGYRSHSNTVTNASADPFLSSFILNYPACEAEEISKSVVTSAEDSSTKNTTTPVQHIWKSSFDPSLSIEEREKRMRQAAGRSSFVQDLFLSTLLGD* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2928 234 Pfam Drought induced 19 protein (Di19), zinc-binding 45 97 IPR008598 -
Mtr4g2928 234 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 233 IPR033347 -
Mtr4g2928 234 Pfam Stress-induced protein Di19, C-terminal 119 231 IPR027935 -
Mtr4g2928 234 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 233 - -
Mtr4g2928 234 SUPERFAMILY TRAF domain-like 46 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2928 Mtr-Chr4 42994998 42997896 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr4g2928 Di19_C 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2928 - - mtr:MTR_4g088430 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2928 4 42994998 42997896 Mtr4g2928 4 42994998 42997896 ECH