Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2922 ATGGAAGGTGAAGGTAGTTCGGAGGGAGAGAGTGATCGGAAAAGGGGTGGTGCAGATGATGGCAAAATTGCGGTTTCAACTGAGGGGCAGAGTAAGCCTAAACGACAGATGAAGACACCGTTTCAGCTTGAAACCCTAGAAAAAGCTTATGCTTTGGATAATTACCCTTCAGAGCCGGTGAGGATAGATTTGTCTGAGAAATTGGGGTTGACGGATCGGCAGTTGCAGATGTGGTTCTGTCATAGGAGGTTGAAGGATAAGAAGGAGTCTGCTCCCAAGAAGGTGGTGCCGCCACGGAAGCCGGTGGTTCAGCCTTTGCCGGATTCCCCGGTGGATGATCATAGGATGGGGTTTGAGCATGGTAATGAGTATGACTCAGGGTCGGGTTCAGGTTCGAGTCCGGGGTTGGAGCCACGGAATGCAATGGCACTGAGTGTTGGTTATTATGAGTCCCCACATGATGAAATGGAGCTTAAAGCAATTGCTTGTGTGGAGGATCAGTTAGGTGAACCATTGAGGGAGGATGCACCCATTATAGGAGTTGAGTTTGATCCATTGCCACCGGATGCATTTGGGGCACTAATAGCAGTTACAGAACGCCAGAAGCGACCTCGTCTTGCATACGACGGTAAAATATATGGAAGACATGATGTTAAAACAGACAAAGCTAAGGCAAGGACATTCCATGAATATCTACCAAGCAAGTCTGGCATTAGGTCTGATGCTTTTGGACAATTCAGCCAATCTCATGTACACGTTCCAATGCAGGGTCCATCCAAAACCCCTCCGATTGTGCCTAGAAATCATGCCGCCCAGGGTCATTCTTCTCGTGTTCCTATTTTGTCTCAACAAGGAAAGCAAGGAAGTCCCTACCAATCGCCTCCTCGAGAATTAGCCACAAACATAGTGAGTGCTGGAATGAACTCCCACCTCATCGAGCCAGAAAATCCCTATGCTTCACCTAGTGGACAAATTTTGCAAAACAATGCAATGCATATAGAGAGGAAACGAAAGGGTGATGATGCCAAAATTACCAGGGATGTTGAAGGCCATGAGCTCGAAAAACACGATAGCACTAGACGAAAGAATGAGGAGCGAGTGAGGAAAGAAATGGAGAGACAAGATCGTGAAAGAAGAAAGGAAGAAGAGAGATTGATGCGTGAGAGACAGCGTGAAGAGGAAAGATCAAAACGAGAGGAAAAACGTGAAATTGAACGAAGGGAAAAGTATCTGCTGAAAGAAAATATAAAAGCTGAGAGAATAAGGCAAAAAGAAGAGCTACGGAAGGAGAAAGAGGAAGAGAGAAGAAAAGCTGCCCTTGAGAAGGCAACTGCCCGTAAAATAGCTAAGGAATCCCTGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTAGCTGCCTCGAGCAAGGGGCTTTCCTCTATTATCCGTCTTGATTTTGATACTTTGCAAAATATTGAATCATTTAGGGATTCATTGTGTCTTTTCCCACCTGAGAGTGTAAAACTAAGAAAACCATTTGCTATCCAACCATGGATCAACTCCGAAGATAATGTTGGAAACCTTCTCATGGTTTGGAGGTTTTTGATTACCTTTGCTGATGTTCTGGAGTTATGGCCTTTTACACTTGATGAGTTTGTGCAAGCATTTCACGATTATGATTCAAGATTGTTGGGTGAGATACATGTCGCTCTCCTTAAGGTGATAATAAAAGACATTGAAGATGTCGCAAGAACACCTTGTACCGGATTAGGAATGAATCAGAATGGTGCTGCTAATTCTGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGCTTTGACATACGAAATTGGCATAAGCACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAACTAGCTTTGTCTGCAGGATATGGACCACAGTTTAAGAAAAGAAGTATTACATCTTCACGTGCCAATAGTAAAGATGAGGGAAGAAGTTCTGAAGATATCATTTCTACACTTCGAAATGGTTCAGCAGCTCAAAACGCCTTGACAAAAATGCAGGAGAGAGGTCTATTAGGACCTCGAAGATCTAGGCATCGGTTAACTCCTGGAACAGTTAAATTTGCAGCATATCATGTTCTCTCACTAGAGGATGGCAAGGGATTGAATGTAATAGAGCTCGCCGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGTCAACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTGACAAGAGATGCCAAGCTTTTTGAAAGAGTAGCCCCATCAACTTATTGTGTACGTGCTGCATTTAGGAAGGATCCTGCTGATGCTGAGTCCATTCTTTCTGAAGCAAGAAAGAAAATTCAGATCTTTGAAAATGGGTTTCTAGCTGAGGAAGATGCTGAAGATGTTGAAAGAGAAGAGTCAGAAAGTGAAGTTGACGAGGATCCTGAAGTTGATGATTTGGTTAATCCTTCAACTGTTAATAAAACATCTGAACCGTGTAATGATTTCTCCTCAAGTGGAAAAGAAAATCTAGGTCATGATGGAGAACTTAAAGATGGGTTCGATAAGGATCTGCCTGGTTTTCCTGACAATGGTTCCAAGAATGCTGATTGTCCAAGTGGACAACCTGTTGCTTGTGAAAGTCTAATTGCCAGAAATCTAGGTGAAGATAATATAGAAGTTGATGAAAGTAAGTCTGGAGAATCATGGATTCAAGGGCTCACTGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGATTAAATGCTCTTGTTGTATTGGTCGGTTTGGCAAATGAAGGAAATTTGATCCGCGTTGTTCTCGAGGATCGTTTGGAGGCAGCAAATGCTCTGAAGAAGCAAATGTTGGCAGAAGCACAGATAGATAAAATTCGCCTGAAAGATGATAATGTTAATAAGTCAGATTTTCCTTCTATCAATGGTATCAGGGTTGAAACACCGATTACATGTGCTGCTGCGGAGGGCAACCAAAGCCCATTGCTTGATATTAATATTTGCAATAATAATAATGAGGAATCTCCCAGCAAAGCAGAAAATAAAAGACTTGCTGTTGTTGGACAAAGCCTATCTGAAAAGCTCCCGTCAGTTCAAGATCTCTGCATAGGTCCTGATAATCCTCAGACTCCGTTATCTGCACAATATTCAAAACGGTCACGGTCTCAGTTAAAATCTTTTATTTCTCACTTAGCAGAGGAGATGTACATCTATAGATCCTTACCTCTTGGGCAAGATCGCAGACATAATCGATATTGGCAATTTGTTGCATCTGCTTCTTGCAATGACCCTGGCTCGGGCAGGATCTTTGTTGAATATCATGATGGCAAATGGAGGCTTATTGATTCTGAAGAGGCCTTTGATGCACTTCTGAATTCACTGGATTCTCGTGGGATCAGGGAGTCACATTTGCGTCTAATGTTGCTAAAGATTGAGAATATATTTAAGGAAAATGTTCAAAAGAATGCAAAATGTGCCAAAATTGGAAACACAGATGAAATCTGTGTTAAAAATGAAGCAGAGGAAACAGATTCCAGTCCTGATCACCATACTAGATCCGACAGTCCTAGCAGTACTCTTTGTGGTTTGAGCTCTGACACTTCAGAAACTTCGGCATCTTTCACAATTGAGCTTGGAAAAAGTGAGAGCGACAAGAAAGCTTCCTTGAGAAGGTATCAAGATTTTCAAAAATGGATGTGGAAAGAATGCTATAACCCATCAATATTATGTGCAATGAAATATGGGAAAAAAAGATGCAAACCTCAGGTTGACATATGTGATATCTGTCTCAACCTTTATTGCTTGGAAGACTCCCATTGCAGTTATTGCCACCTTACTTTTCCGTCAAATGATGGATTTGATTTTTCTAAACATGTAATTCAATGTGGAGACAAGTCATCCAAAGATATTAGTATTTTTGAATCTCCTCTTCCATTACGGACAAGATTGCTTAAGGCCCTGCTGGCTTTTATTGAGGTATCTGTTCCACCTGAAGCATTTCAATCAGTTTGGACAGAAGATATTAGGAGGCTTTGGGGTGTGAAATTGAGCAGATCATCTTCTGCTGAGGAACTTCTACAGATGTTGACTCTATTTGAGAGAGCACTAAAGCGAGACTTTTTATCATCACCCTTCTCTACAACTGGGGATTTGTTGGGAATGAATGCCATGTCGGAGAGTGCTGCACATACTTCTATGGATCTTGAATCAGTTACTGTTCTTCCATGGGTTCCGCGGACCACTTCAGCTGTGTCTCTCAGACTTTTTGAGCTCGACACATCCATCACCTACTTACAACTAGAGAAACCCGAGCCTTGTGAGGAGAAAGAAGCTAGATTCATAAAGCTTCCTTCAAGATATGCTTCTGTCAAATCAACAAAAGTGGTTGAGCCAGTAGATTTGGACCATGATGAATTTATGAAAGTGAAATCCGCCCCTTTGAAAATTGTGCAAAGCAGCAAAAAACGTCGGCGACTGAATCAGGATAAAGGAAGGGATAAAAAGCTTTCTAAAAGAACGAGTCATTCCAAACGAGATAATGGCCACCACAATTTTGAAGTCACTGAGAATCTAAGTCAAAGAATAAAACAGCAGGGACAAGGATCTCAAGGACAAACAGGTGGACGTGGCCCCCGAACTATTAGGAAAAGGAGAGAGGAGAAGAGGGCTGTTGAAGATTTGTCGCTGGGCCATAAGGCTGCCAATAATAGCTCCAATATTGGTAGAGAACAATCGAGAATCTTGGATGAGGACTGGGATGATGAGAAGGCAAGTCCCATGAGACCCATCCAGATGGAAGCTGCTGACATGAGTAGCAGCAGTGAAGAGATTGAATATGATGACAATGCCCAGGCAGTGGAATCTGATGACAATGTCGAAGCAGTTGAGTACGGTCAAGGAAACTGGGAGATAGGTTTTAATGGTACCCCAAACAGATGGAATAGGGATTTGGTTGGAATGAGTGAAGAAGAAGACGTGGAAGCTTCTGAAGATGACAATGACAATGGCATTGAAGGGAATGAAGAGGAAGAGGAGGGTTCTGAGGCAGATGTTATGAGCCAGGGTTCGGATCGTATGGCAAATAGAGTTGTAAAAGAAGAAAGTTTGGACTCGAGTGACTCCGAAGATTCTTTTGATTAG 5157 0.4254 MEGEGSSEGESDRKRGGADDGKIAVSTEGQSKPKRQMKTPFQLETLEKAYALDNYPSEPVRIDLSEKLGLTDRQLQMWFCHRRLKDKKESAPKKVVPPRKPVVQPLPDSPVDDHRMGFEHGNEYDSGSGSGSSPGLEPRNAMALSVGYYESPHDEMELKAIACVEDQLGEPLREDAPIIGVEFDPLPPDAFGALIAVTERQKRPRLAYDGKIYGRHDVKTDKAKARTFHEYLPSKSGIRSDAFGQFSQSHVHVPMQGPSKTPPIVPRNHAAQGHSSRVPILSQQGKQGSPYQSPPRELATNIVSAGMNSHLIEPENPYASPSGQILQNNAMHIERKRKGDDAKITRDVEGHELEKHDSTRRKNEERVRKEMERQDRERRKEEERLMRERQREEERSKREEKREIERREKYLLKENIKAERIRQKEELRKEKEEERRKAALEKATARKIAKESLELIEDEQLEMMELAASSKGLSSIIRLDFDTLQNIESFRDSLCLFPPESVKLRKPFAIQPWINSEDNVGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPCTGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLALSAGYGPQFKKRSITSSRANSKDEGRSSEDIISTLRNGSAAQNALTKMQERGLLGPRRSRHRLTPGTVKFAAYHVLSLEDGKGLNVIELAEKIQKSGLRDLSTSKTPEASISVALTRDAKLFERVAPSTYCVRAAFRKDPADAESILSEARKKIQIFENGFLAEEDAEDVEREESESEVDEDPEVDDLVNPSTVNKTSEPCNDFSSSGKENLGHDGELKDGFDKDLPGFPDNGSKNADCPSGQPVACESLIARNLGEDNIEVDESKSGESWIQGLTEGEYSDLSVEERLNALVVLVGLANEGNLIRVVLEDRLEAANALKKQMLAEAQIDKIRLKDDNVNKSDFPSINGIRVETPITCAAAEGNQSPLLDINICNNNNEESPSKAENKRLAVVGQSLSEKLPSVQDLCIGPDNPQTPLSAQYSKRSRSQLKSFISHLAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDGKWRLIDSEEAFDALLNSLDSRGIRESHLRLMLLKIENIFKENVQKNAKCAKIGNTDEICVKNEAEETDSSPDHHTRSDSPSSTLCGLSSDTSETSASFTIELGKSESDKKASLRRYQDFQKWMWKECYNPSILCAMKYGKKRCKPQVDICDICLNLYCLEDSHCSYCHLTFPSNDGFDFSKHVIQCGDKSSKDISIFESPLPLRTRLLKALLAFIEVSVPPEAFQSVWTEDIRRLWGVKLSRSSSAEELLQMLTLFERALKRDFLSSPFSTTGDLLGMNAMSESAAHTSMDLESVTVLPWVPRTTSAVSLRLFELDTSITYLQLEKPEPCEEKEARFIKLPSRYASVKSTKVVEPVDLDHDEFMKVKSAPLKIVQSSKKRRRLNQDKGRDKKLSKRTSHSKRDNGHHNFEVTENLSQRIKQQGQGSQGQTGGRGPRTIRKRREEKRAVEDLSLGHKAANNSSNIGREQSRILDEDWDDEKASPMRPIQMEAADMSSSSEEIEYDDNAQAVESDDNVEAVEYGQGNWEIGFNGTPNRWNRDLVGMSEEEDVEASEDDNDNGIEGNEEEEEGSEADVMSQGSDRMANRVVKEESLDSSDSEDSFD* 1719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2922 1718 ProSiteProfiles DDT domain profile. 517 576 IPR018501 -
Mtr4g2922 1718 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Mtr4g2922 1718 SUPERFAMILY Homeodomain-like 24 89 IPR009057 -
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 1551 1567 - -
Mtr4g2922 1718 Coils Coil 939 959 - -
Mtr4g2922 1718 ProSiteProfiles HARE-type HTH domain profile. 699 768 IPR007759 GO:0006355
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 1583 1599 - -
Mtr4g2922 1718 Pfam Homeodomain 32 88 IPR001356 GO:0003677
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 843 859 - -
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 1525 1548 - -
Mtr4g2922 1718 SMART testlast3 517 576 IPR018501 -
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 1 21 - -
Mtr4g2922 1718 Pfam DDT domain 519 573 IPR018501 -
Mtr4g2922 1718 Gene3D - 20 93 - -
Mtr4g2922 1718 PANTHER HOMEOBOX DOMAIN PROTEIN 4 1718 - -
Mtr4g2922 1718 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 4 1718 IPR044977 GO:0006357
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 1662 1689 - -
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 337 403 - -
Mtr4g2922 1718 Coils Coil 364 407 - -
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 1 40 - -
Mtr4g2922 1718 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 900 943 IPR028942 -
Mtr4g2922 1718 Coils Coil 413 444 - -
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 267 296 - -
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 89 138 - -
Mtr4g2922 1718 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1078 1150 IPR028941 -
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 1612 1626 - -
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 1191 1206 - -
Mtr4g2922 1718 Pfam HB1, ASXL, restriction endonuclease HTH domain 699 767 IPR007759 GO:0006355
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 1179 1206 - -
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 797 874 - -
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 797 820 - -
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 275 296 - -
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 823 842 - -
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 1494 1508 - -
Mtr4g2922 1718 CDD homeodomain 34 90 IPR001356 GO:0003677
Mtr4g2922 1718 MobiDBLite consensus disorder prediction 1490 1718 - -
Mtr4g2922 1718 SMART HOX_1 31 93 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2922 Mtr-Chr4 42926603 42936930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2922 26 1650 Homeobox Transcription Factor Family AT1G28420 47.633 0.0 1268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Mtr4g2922 WSD 8.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2922 - - gmx:100818817 2267.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2922 4 42926603 42936930 Mtr4g2922 4 42926603 42936930 ECH
Mtr4g2922 4 42926603 42936930 Mtr2g0415 2 4167048 4175918 PCT