Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2916 ATGGGAACACTAGTCCATTTGATCTGCATTCTACTAACAATCTTAACCCTTTCAACAAACGTAAAATCTTTAAACCAAGAAGGTTTATACCTCTACCAATTCAAACTCACCTTAGACGATCCAGACTCAACACTCTCTTCATGGAACCCTCGAGACACAACTCCTTGTAACTGGTACGGTGTACGCTGTGACTCCACAAACACCACCGTAACTGAACTTAATCTCTCCAACACCAACATTCAAGGTCCATTCACAGCCTCAATCCTCTGTCGTCTCCCTAATCTCTCCTCCATTAACCTCTTTAACAACTCCATTAACCAAACTTTTCCTCTTCAAATCTCCCTCTGTCAAAATCTCATTCACCTTGATCTCTCTCAGAATCTTTTAACCGGTTCTCTTCCAGAAACTTTACCTCTTCTTCCTAAACTTATTTACCTTGACCTTACCGGTAATAATTTCTCAGGTCCTATACCTTTATCTTTCGGATCATTTAAATCACTTGAAATACTTTCATTAGTTTCAAATCTTCTAGAAGGTACTATTCCACCTTCACTTGGAAATATAACTAGTTTGAAAATGCTTAACCTCTCTTACAACCCGTTTTACCCGGGTCGGATTCCACCGGAAATTGGTAATTTAACAAACCTTGAAGTGCTTTGGTTAACACAATGCAACCTCGTTGGTGTTATTCCTGAAACACTTGGAAAGCTTAAGAAACTTAAGGATTTGGACCTTGCTTTAAATGATTTATATGGTTCTATTCCGAGTTCGCTCACTGAATTAACAAGTTTGATGCAGATTGAGTTGTATAATAACTCGTTATCAGGTGAGTTACCTAAGGGAATGGGGAACTTGAGTTCTTTACGGCTTCTTGATGCGTCAATGAATCATTTAACAGGGAGGATTCCGGCTGAGCTTTGTTCATTACCGTTGGAGAGTTTGAATCTTTATGAGAATCGTTTTGAAGGTGAGTTACCGGCGAGTATAGCGAACTCACCGAATTTGTATGAGTTGAGGTTGTTTGGAAACCGGTTAACTGGAAGGCTGCCGGAGAATTTAGGGAAGAGGTCGCCGTTGAGGTGGCTTGATGTTTCGAGTAATCAGTTTTGGGGGAATATTCCGGCGAGTTTGTGTGATTTTGGTGAGTTGGAGGAGGTTTTGATGATATATAATCTGTTCACCGGTGAGATACCGGCGAGTTTGGGGACTTGTCAGAGTTTGACGCGTGTGAGATTGGGTTTTAATCGGTTTTCCGGTGAGGTTCCGGCGGGTATCTGGGGTCTTCCTCATGTGTATCTTCTTGAGCTTGCTCATAACTCGTTTTCGGGTTCTATTTCGAAGACTATTGCTGGAGCAGGGAACCTTTCGTTGTTGATATTGTCCAAGAATAATTTATCTGGAACTGTTCCTGATGAGGTTGGGTGGTTGGAAAATCTTGTTGAGTTTTCTGCTGGTGATAATATGTTCACTGGTTCACTTCCTGATAGTTTGGTGAATCTTGGCCAGCTTGGGATTCTTGATTTTCACAACAATAGGCTCTCTGGGGAACTACCAAAGGGGATTCATAGTTGGAAGAAGTTGAATGATTTGAATTTGGCTAACAATGAGATTGGTGGAAAGATTCCTGATGAGATTGGGAGTTTGTCTGTGCTTAATTTTCTTGATCTTTCTAGGAATCAGTTTTCTGGGAAAATCCCTCATGGGTTGCAGAATTTGAAGCTTAATCAGCTTAATTTGTCTTATAATCGTTTTTCTGGAGAACTACCTCCTCAATTGGCTAAGGAAATGTATAGGTTAAGTTTCCTTGGGAATCCTGGTTTGTGTGGAGATTTGAAAGGATTGTGTGACGGTAGGAGTGAAGTGAAGAATTTGGGTTATGTTTGGTTGCTTCGAGCAATTTTTGTTCTTGCTCTTTTGGTGTTCTTAGTTGGTGTTGTTTGGTTTTACTTTAGGTACAAAAATTTCAAGGACTCAAAAAGGGCTTTTGATAAATCGAAATGGACTTTGATGTCGTTTCATAAACTGGGTTTCGGTGAAGATGAAATTTTAAATTGTCTTGACGAAGATAATGTCATTGGAAGTGGTTCTTCCGGTAAGGTTTACAAGGTTGTACTTAACAGTGGAGAAGCTGTTGCTGTGAAGAAGATATGGGGAGGGGCTAGGAAGGAAGTGGAGAGTGGAGATGTTGAGAAAGGTAGGGTTCAAGACAACGCTTTCGATGCAGAGGTTGACACATTGGGAAAAATTAGACACAAGAACATTGTCAAGTTATGGTGTTGTTGTACCACAAGGGATTGCCAACTCTTGGTTTATGAGTATATGCAAAATGGTAGTCTTGGTGATTTGCTTCATAGCAGTAAAGGAGGGTTGTTGGATTGGCCAACAAGATACAAGATAGCTGTGGATGCTGCAGATGGACTCTCTTATCTCCATCATGACTGTGTTCCCCCAATTGTTCATAGAGATGTTAAATCTAACAATATCTTGTTGGATGGAGACTTTGGTGCAAGGGTGGCAGATTTTGGACTAGCTAAAGTAGTCGAAACCACTGCGAAAGGAATTAAATCCATGTCCATCATAGCTGGTTCTTGTGGCTATATTGCACCAGAATATGCATACACACTCAAAGTGAACGAGAAGAGCGACATTTATAGTTTTGGTGTTGTTATACTTGAATTAGTTACTGGAAGACGCCCTGTGGATCCTGAGTTCGGAGAGAAAGATTTGGTTAAATGGGTTTGCACTACATTGGATCAGAAAGGCGTAGATCATGTACTTGACTCAAGGCTTGATTCATGTTTCAAAGAAGAAATTTGCAAGGTTTTCAACATTGGCCTCATGTGTACTAGTCCTCTTCCAATCAACCGGCCTTCAATGAGAAGAGTAGTGAAGATGTTGCAAGAGGTAGGAATAGAGAACCAAATGAAACCTGCCAAGAAAGATGGAAAATTATCCCCTTATTACTATGATGATGCCTCAGACCATGGAAGTGTTGCTTGA 3000 0.406 MGTLVHLICILLTILTLSTNVKSLNQEGLYLYQFKLTLDDPDSTLSSWNPRDTTPCNWYGVRCDSTNTTVTELNLSNTNIQGPFTASILCRLPNLSSINLFNNSINQTFPLQISLCQNLIHLDLSQNLLTGSLPETLPLLPKLIYLDLTGNNFSGPIPLSFGSFKSLEILSLVSNLLEGTIPPSLGNITSLKMLNLSYNPFYPGRIPPEIGNLTNLEVLWLTQCNLVGVIPETLGKLKKLKDLDLALNDLYGSIPSSLTELTSLMQIELYNNSLSGELPKGMGNLSSLRLLDASMNHLTGRIPAELCSLPLESLNLYENRFEGELPASIANSPNLYELRLFGNRLTGRLPENLGKRSPLRWLDVSSNQFWGNIPASLCDFGELEEVLMIYNLFTGEIPASLGTCQSLTRVRLGFNRFSGEVPAGIWGLPHVYLLELAHNSFSGSISKTIAGAGNLSLLILSKNNLSGTVPDEVGWLENLVEFSAGDNMFTGSLPDSLVNLGQLGILDFHNNRLSGELPKGIHSWKKLNDLNLANNEIGGKIPDEIGSLSVLNFLDLSRNQFSGKIPHGLQNLKLNQLNLSYNRFSGELPPQLAKEMYRLSFLGNPGLCGDLKGLCDGRSEVKNLGYVWLLRAIFVLALLVFLVGVVWFYFRYKNFKDSKRAFDKSKWTLMSFHKLGFGEDEILNCLDEDNVIGSGSSGKVYKVVLNSGEAVAVKKIWGGARKEVESGDVEKGRVQDNAFDAEVDTLGKIRHKNIVKLWCCCTTRDCQLLVYEYMQNGSLGDLLHSSKGGLLDWPTRYKIAVDAADGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGLAKVVETTAKGIKSMSIIAGSCGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDLVKWVCTTLDQKGVDHVLDSRLDSCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVGIENQMKPAKKDGKLSPYYYDDASDHGSVA* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2916 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Mtr4g2916 999 Gene3D Phosphorylase Kinase; domain 1 670 773 - -
Mtr4g2916 999 Pfam Protein kinase domain 688 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g2916 999 Gene3D Transferase(Phosphotransferase) domain 1 774 990 - -
Mtr4g2916 999 Gene3D Ribonuclease Inhibitor 311 617 IPR032675 -
Mtr4g2916 999 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515
Mtr4g2916 999 Gene3D Ribonuclease Inhibitor 184 310 IPR032675 -
Mtr4g2916 999 ProSiteProfiles Protein kinase domain profile. 686 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g2916 999 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Mtr4g2916 999 ProSiteProfiles Leucine-rich repeat profile. 118 140 IPR001611 GO:0005515
Mtr4g2916 999 PANTHER LRR RECEPTOR-LIKE KINASE 3 981 - -
Mtr4g2916 999 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 981 - -
Mtr4g2916 999 SUPERFAMILY Protein kinase-like (PK-like) 682 967 IPR011009 -
Mtr4g2916 999 SUPERFAMILY L domain-like 311 519 - -
Mtr4g2916 999 SMART serkin_6 686 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g2916 999 Gene3D Ribonuclease Inhibitor 24 183 IPR032675 -
Mtr4g2916 999 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Mtr4g2916 999 SUPERFAMILY RNI-like 73 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2916 Mtr-Chr4 42864568 42868605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2916 21 999 Receptor kinase-like Gene Family AT1G28440 70.690 0.0 1425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mtr4g2916 Pkinase 9.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2916 - - gmx:100819887 1681.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2916 4 42864568 42868605 Mtr4g2916 4 42864568 42868605 ECH
Mtr2g0419 2 4213003 4216868 Mtr4g2916 4 42864568 42868605 ECH