Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2915 ATGACATGGTGCAATGACTCAGATGATCAAGATAGGGGCATTGAACTAATAACATCTACTGTTATTCCTGGAACTAGCAATGAAAGTACTCTTGTTACAGATGATGAAACAAAACCAACCGAAGTTCGAACCCTAACTTGCCCCTCATGTGGCCATAACATTGAATTTCAAGATCAGGGTGGAATCAATGAACTGCCGGGTTTACCGGCAGGAGTGAAGTTTGATCCGAATGATCAAGAGATACTTCAGCATTTGGAAGCAAAGGTTCTGTTTGATGTGCCCAAACTTCATCCTCTTATTGATGAGTTCATACCAACACTTGAAGGAGAGAACGGAATCTGTTATACACATCCAGAAAAGCTACCAGGTGTAAAAAAAGATGGACAGATCCGGCACTTCTTTCACAGGCCATCTAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCAAACTGATGAAGAAGGAAGTGAAACAAGATGGCACAAAACAGGGAAAACTAGACCAGTTTTTATTGACGGTGTTATGAAAGGTTTCAAGAAGATACTAGTCCTCTACACCAACTATGGAAGGCAAAAGAAGCCTGAGAAGACCAATTGGGTGATGCATCAATACCACCTTGGTAGTAATGAAGAAGAGAAAGATGGTGAATTAGTTGTTTCAAAGGTGTTTTACCAAACACAACCTCGACAATGTGGTGGTAATAATTCCAATATTATCAAGGTTACTACTAGTTATGAAAATGAACTGATGATAAATCAAGGAAATGTCCATGATGATAATGAAGCTCCTCCTATGGAATACTACAATCCTTTCATAAATTATGACCATGTTGGTCATAATTTGGGAAGCTCTGAATCCCAATTTATTCCAAACTTGGTTATGCAAGGTGATGGCTCTTCCTTTATTCGATTGGCAATGGATGCAAACAAAGCTGGGTTGAGCAGAAATTAG 957 0.3918 MTWCNDSDDQDRGIELITSTVIPGTSNESTLVTDDETKPTEVRTLTCPSCGHNIEFQDQGGINELPGLPAGVKFDPNDQEILQHLEAKVLFDVPKLHPLIDEFIPTLEGENGICYTHPEKLPGVKKDGQIRHFFHRPSKAYTTGTRKRRKVQTDEEGSETRWHKTGKTRPVFIDGVMKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGELVVSKVFYQTQPRQCGGNNSNIIKVTTSYENELMINQGNVHDDNEAPPMEYYNPFINYDHVGHNLGSSESQFIPNLVMQGDGSSFIRLAMDANKAGLSRN* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2915 318 SUPERFAMILY NAC domain 64 227 IPR036093 GO:0003677|GO:0006355
Mtr4g2915 318 Gene3D NAC domain 77 231 IPR036093 GO:0003677|GO:0006355
Mtr4g2915 318 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 303 IPR044799 GO:0003700
Mtr4g2915 318 MobiDBLite consensus disorder prediction 141 163 - -
Mtr4g2915 318 Pfam No apical meristem (NAM) protein 69 208 IPR003441 GO:0003677|GO:0006355
Mtr4g2915 318 ProSiteProfiles NAC domain profile. 68 227 IPR003441 GO:0003677|GO:0006355
Mtr4g2915 318 MobiDBLite consensus disorder prediction 147 163 - -
Mtr4g2915 318 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 1 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2915 Mtr-Chr4 42789441 42793331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2915 1 313 NAC Transcription Factor Family AT1G28470 59.146 3.56e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr4g2915 NAM 4.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2915 - - gmx:100795920 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2915 4 42789441 42793331 Mtr4g2915 4 42789441 42793331 ECH
Mtr2g0422 2 4252201 4255192 Mtr4g2915 4 42789441 42793331 ECH