Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2910 ATGATGGGTTTGATTGATCTCAACACTACTGAGGAAGATGAAACACCATCTTCTGGTTCATCTTCAAGTACAAGCATAGGTAGTGTTGGTGCTGGTTCTTCTGTGTGTTTGGAGCTATGGCATGCTTGTGCTGGTCCTATGATCTCTTTGCCAAAGAAAGGAAGTGTTGTTGTTTACTTCCCTCAAGGACACTTGGAACATCTTCATGATTTTCCGTTATCTTTTTCGGATAATATTCCTTCTCATGTGTTCTGTCGTGTTGTTGATGTCAAGCTTCATGCTGAGGAAGGGAACGATGAGGTGTATTGTCAGGTGTTGTTGGTTCCTGAAAGTGAGCAAGTGCAACAAAAGTTGAGGGAAGGGGTAATTGATGGTGATGGTGATGGTGATGGTGAAGGAGAGGATACTGATGCTGTTATGAAGTCAACAACACCTCACATGTTCTGCAAGACTCTTACTGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTACCTCGTCGAGCAGCCGAAGATTGCTTTCCTCCCCTGGATTATTCTCAACAAAGACCTTCTCAAGAGCTTGTGGCAAAGGATCTGCACGGCCAGGAATGGAAGTTTCGACATATATATAGAGGGCAGCCACGAAGGCATTTGCTTACGACTGGATGGAGTGCATTTGTTAACAAGAAGAAACTTGTATCTGGAGATGCAGTTCTGTTCCTCCGGGGAGAGGATGGCGAATTGAGATTGGGAATCCGCAGGGCAGCTCAATTAAAAAGTTGCAGCAATTTTTCATCTATCTCCGGCCAGCAATTGAATCTTGGTAGCCTTAGGGACATAGTTAATGCTTTATCTACTAGATGTGCCTTTAGCATACACTACAATCCGAGGATTGGTTCATCTGAGTTCATCATACCTATCCACAAATTCTTAAAGAGCCTTGATTATTCTTACTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAATCTGAAGATGCTGCAGAGCGAAGATTCACAGGATTGATTATTAGAATTACTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAAATGCCTAGTGGTAAGGTGGGATGACATGGAAGCTTCAAGGCTCAACAGGGTTTCACCATGGGAGATTGAGCCCTCAGGCTCATCATCCACCACCAATAGCTTGATGGCAACTAGTTTGAAGAGGACCAAGACTGGATTGCCTTCATCAAAGCTAGAGTTTCCGGTTCCCAGTAGAATTGGGACATCAGACTTTGGGGAATCACTGCGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATTTTAGGCGTTGATACTACTTTCAATAGTATCAATGCTCATAGTCACCACCAGTTATCTGAATTACGGAGGTGCTATCCCGGTTCAACCTATCCCGGGATCGCTTCAACAGGAAACAACATCAGAATCCCACAAATGAATTCTGATGTTTCCTGCAATGGCTTTGGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGGACAAGCCTTTTCTGTCGACGAGGCGTGTAGAAATGGTCGCTTTGGACTCTTTGATGGTCACCACCAGGTGCCAAGATCCACAAATGGATGGTCTTCCCAGACGAGTAACAACTCACATTTTCATCCATCAGTGTTGATGTACCAGCAAGCGTCAAACATGGATTATAATAGCAAAATCAATCCGGTGATGGAGGATAACGTCCTTCAAAGAGGTTCGTACTATGCTTCTGAAATGAAAGATGGTACATTTGCGTCGACACCAACTAATAAGCCTATTTTCCGCGGGCTAGCTCATGAAGACACAAATTCATTTGGTACACATTCACGCGATTTGGTTACACTACAGAGAAGCGGTCAAGAGTTGGTTTCCACATGTAAAAATAGCTGCAGAGTGTTTGGTTTTTCATTAACCGAGGGTGCTCCCATTGCAAATAAAGATGCTGAACCCTCTGCAGTCACTTGCCAGATAAATCCTGGACCTCCCTCCTTCACAAGACATATTGAAGATGATTTCAATCCAAGGCATTCACTTCGGAGCAAGGCGGTTGAAAGTTACTGTACCAAAGGTGTGCTGCAGTATTGA 2106 0.4397 MMGLIDLNTTEEDETPSSGSSSSTSIGSVGAGSSVCLELWHACAGPMISLPKKGSVVVYFPQGHLEHLHDFPLSFSDNIPSHVFCRVVDVKLHAEEGNDEVYCQVLLVPESEQVQQKLREGVIDGDGDGDGEGEDTDAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSCSNFSSISGQQLNLGSLRDIVNALSTRCAFSIHYNPRIGSSEFIIPIHKFLKSLDYSYSVGMRFRMRFESEDAAERRFTGLIIRITDVDPVRWPGSKWKCLVVRWDDMEASRLNRVSPWEIEPSGSSSTTNSLMATSLKRTKTGLPSSKLEFPVPSRIGTSDFGESLRFQKVLQGQEILGVDTTFNSINAHSHHQLSELRRCYPGSTYPGIASTGNNIRIPQMNSDVSCNGFGESFRFQKVLQGQEILPSQPYGQAFSVDEACRNGRFGLFDGHHQVPRSTNGWSSQTSNNSHFHPSVLMYQQASNMDYNSKINPVMEDNVLQRGSYYASEMKDGTFASTPTNKPIFRGLAHEDTNSFGTHSRDLVTLQRSGQELVSTCKNSCRVFGFSLTEGAPIANKDAEPSAVTCQINPGPPSFTRHIEDDFNPRHSLRSKAVESYCTKGVLQY* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2910 701 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677
Mtr4g2910 701 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677
Mtr4g2910 701 MobiDBLite consensus disorder prediction 10 27 - -
Mtr4g2910 701 Pfam Auxin response factor 275 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr4g2910 701 SUPERFAMILY DNA-binding pseudobarrel domain 140 255 IPR015300 -
Mtr4g2910 701 Gene3D - 146 250 IPR015300 -
Mtr4g2910 701 SMART B3_2 148 250 IPR003340 GO:0003677
Mtr4g2910 701 MobiDBLite consensus disorder prediction 1 27 - -
Mtr4g2910 701 CDD B3_DNA 146 248 IPR003340 GO:0003677
Mtr4g2910 701 Gene3D - 311 385 - -
Mtr4g2910 701 PANTHER AUXIN RESPONSE FACTOR 26 701 - -
Mtr4g2910 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 26 701 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2910 Mtr-Chr4 42756295 42760844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2910 30 662 B3 DNA Binding Superfamily AT5G60450 41.272 5.22e-143 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr4g2910 B3 7.3e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2910 K14486 - gmx:100808119 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2910 4 42756295 42760844 Mtr4g2910 4 42756295 42760844 ECH