Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2908 ATGGCTTTCAGTACCAACGGTTCTGAAGAAAGTGAACTGTATCATGCTCAAATCCATTTGTACAAACATGTATACAACTTTGTTAGTTCCATGGCACTCAAATCAGCCATGGAACTAGGCATAGCTGATGCAATCCATAACCATGGAAAACCAATGACTCTTTCTGAATTAGCCTCATCTTTAAAACTCCACCCTTCTAAAGTTAACATCCTCTATCGATTCTTACGCCTTTTAACACACAATGGCTTCTTTACAAAAACAACAGTGAAAAGTAATGAAGAAGAAGAAACAGCATATGGTCTTACACCATCTTCAAAGCTTCTCATAAGTGGAAAATCGACATGTTTATCAACGCTTATTGAAGGAGCGCTTCATGCAAGTTCTATAGACATGTGGAAGTCTTCAAAGAAATGGTTCAATGAGGATAAGGAACAAACTCTTTTTGAGTGTGCAACAGGAGAGAACTATTGGGATTTTCTTAACAAAGATTCTGAATCTGGTACTTTGAGTTTGTTTCAAGATGCTATGGCTGCTGATTCTAGAATGTTTAAGCTTGCTCTTCATGAGAACAAGAATGTGTTTGAGGGTTTGGAATCTCTTGTTGATGTCGCGGGTGGAACCGGTGCTGTCACAAAGCTTATTCATGAAGCATTTCCTCAGATCAAATGCACTGTTTTTGATCAACCACAGGTTGTTGGTAACTTAACTGGAAATGAAAATTTGAACTTTGTTAGTGGTGATATGTTCAAGTCTATCCCTCCTGCTGACGCCGTTTTACTCAAGTGGGTTTTGCATGACTGGAATGATGAATTATCCTTAAAGATATTGAAGAACAGCAAAGAAGCTATTTCACATAAAGGGAAAGATGGAAAAGTGATTATCATTGACATATCAATTGATGAAACAAGTGATGATCGTAGATTAACTGAGTTGCAATTGGAATATGATTTGGTGATGCTTACAATGTTCCTTGGTAAAGAAAGAACAAAGCAAGAATGGGAAAAACTCATATATGATGCAGGTTTTAGCAGCTACAAAATTACCCCCATTTCTGGCTTCAAGTCTCTCGTTGAAGTTTATCCTTAA 1086 0.3729 MAFSTNGSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILYRFLRLLTHNGFFTKTTVKSNEEEETAYGLTPSSKLLISGKSTCLSTLIEGALHASSIDMWKSSKKWFNEDKEQTLFECATGENYWDFLNKDSESGTLSLFQDAMAADSRMFKLALHENKNVFEGLESLVDVAGGTGAVTKLIHEAFPQIKCTVFDQPQVVGNLTGNENLNFVSGDMFKSIPPADAVLLKWVLHDWNDELSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRRLTELQLEYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLVEVYP* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2908 361 PANTHER O-METHYLTRANSFERASE 5 361 IPR016461 GO:0008168
Mtr4g2908 361 Gene3D - 1 108 IPR036388 -
Mtr4g2908 361 PIRSF O-mtase 1 361 IPR016461 GO:0008168
Mtr4g2908 361 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 361 IPR016461 GO:0008168
Mtr4g2908 361 SUPERFAMILY "Winged helix" DNA-binding domain 10 112 IPR036390 -
Mtr4g2908 361 Gene3D Vaccinia Virus protein VP39 109 361 IPR029063 -
Mtr4g2908 361 PANTHER ISOFLAVONE 4'-O-METHYLTRANSFERASE 5 361 - -
Mtr4g2908 361 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Mtr4g2908 361 Pfam O-methyltransferase domain 132 343 IPR001077 GO:0008171
Mtr4g2908 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 359 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2908 Mtr-Chr4 42735519 42745592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2908 28 348 Monolignol Biosynthesis Gene Families AT5G54160 34.431 1.44e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2908 K22588 - ag:AAY18581 631.328