Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2899 TCGGCTTACGACAAATATTTTTTAGGTGGAGATGATGAAGAAATAACTCCTGGACCAAGGCCAAGATGGATCCCAAAACCTGAGCAAATCCACATTCTTGAAGCCATCTATAACTCAGGGACGACGAATCCACGTAGAGATGAGATTAAGAAGATACGTGAACAATTAGAAGAATTTGGCCAAGTTGGTGATTCCAGTGTCTTTTACTGGTTTCAAAACCGCAAGTACAGAAGCAAAACCAACAAAGTACCCTATAACGAGAAACCGGGAACACAACAAAAAGCAGCTTCAAATAGCTCTCTCCCACAAATCAACACACCACCACCCAACTCATCTTCATCATCTTCCTCTAACAATATTATTGGAATCTCCAATATTAATGATGGGATGGTGATGGTGCCTAATTCACCCGCAATATCTCTGAACCAAAATCAAGATGATACTTATCCTCACACCCTCACTGGAACCGGTCTACAACTACCTACACCCCCATTTTCCTCTTTCCCGGTTGAGAATCATATTAATAAAAGGGTAGTGCTTAATGACATGATAACGCCAGAGGGGTTTAATTACTTCTCTGGTTTTCCAAATATGAGTCAATCTTTACCTCAAGAAAATGTTGATCTGCCTCTACTTAATTATGATAACATCATGAACTATGGAAACAAAAATGGAATCTGCTCAATCAATGACCTTTTTGATCAAGAGAATATTCAAGAGGAGTCGATTCATATGATGCATATGCATCAACAAGACCCACAACTTAATTTTGGTGTCACGACAGCTTCAAGTAATGATGATCATTCAACTGATCTTGCTCCTCTCCCTCCGGCCATTGACATGAGTGCACCTGCTGATATTCCATTCCTCTTTACTGGTGATCAATTTCAAGGTTTTAGTGAGGACAATGTTACTGCAAAATGTAGGGTGATTACTATCGACGGTGCATTCGAAGTTAATGTGGGGCCCTTTAACGTTCGTAAATTCTTTGGCGATGGAGCAGTTCTGCTTGACTCCTCCGGTGTCCCGGTTCTAACCGATGAGTGGGGTGTCACACTCAACTCACTCCACCATGGGGTTGATTATTTCCTGCTGTATTAA 1101 0.4114 SAYDKYFLGGDDEEITPGPRPRWIPKPEQIHILEAIYNSGTTNPRRDEIKKIREQLEEFGQVGDSSVFYWFQNRKYRSKTNKVPYNEKPGTQQKAASNSSLPQINTPPPNSSSSSSSNNIIGISNINDGMVMVPNSPAISLNQNQDDTYPHTLTGTGLQLPTPPFSSFPVENHINKRVVLNDMITPEGFNYFSGFPNMSQSLPQENVDLPLLNYDNIMNYGNKNGICSINDLFDQENIQEESIHMMHMHQQDPQLNFGVTTASSNDDHSTDLAPLPPAIDMSAPADIPFLFTGDQFQGFSEDNVTAKCRVITIDGAFEVNVGPFNVRKFFGDGAVLLDSSGVPVLTDEWGVTLNSLHHGVDYFLLY* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2899 366 MobiDBLite consensus disorder prediction 1 24 - -
Mtr4g2899 366 SUPERFAMILY Homeodomain-like 15 80 IPR009057 -
Mtr4g2899 366 CDD homeodomain 19 82 IPR001356 GO:0003677
Mtr4g2899 366 Pfam Homeodomain 20 79 IPR001356 GO:0003677
Mtr4g2899 366 SMART HOX_1 18 85 IPR001356 GO:0003677
Mtr4g2899 366 MobiDBLite consensus disorder prediction 81 120 - -
Mtr4g2899 366 PANTHER WUSCHEL-RELATED HOMEOBOX 9 10 365 IPR044557 GO:0003700|GO:0050793
Mtr4g2899 366 Gene3D - 19 83 - -
Mtr4g2899 366 ProSiteProfiles 'Homeobox' domain profile. 16 81 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2899 Mtr-Chr4 42654515 42658191 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2899 7 79 Wox Gene Family AT2G33880 67.123 3.15e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Mtr4g2899 Homeodomain 8.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2899 - - mtr:MTR_4g088080 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2899 4 42654515 42658191 Mtr4g2899 4 42654515 42658191 ECH