Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2898 ATGGTTTGGAGGCAATTCCTTAATAGATTACCCACTAAGTATAATCTAAGCCTTAGAGGTGTGAGGTTGAATTCATCTTTATACTGTGTTGGCGGTTGCGGTAGGCTTGAGACTGTGAACCATATCCTTTTTAATCGTGCTGTTTTATGGTCGATTTGGAGTGAGTCGTTGAAATGGCTCGGTGTTTTGGCTGTTTTTGTTGAAGGAGGATTTGAGCGTCTCATTTTGTTCAAAGGTCTAGTTGCAGGAGGTAAAACCGTTTGTGAGAGGTTGGGAGTGATATTGGTCTCCATTATCTCTTCCATTTGGAATGCTAGGAATGCAAAGGAGGCTTCTGGTTCTGGAGTTGGATTAATCAGCTGCAAGGAATGCGGGATTTTGAACGTGGATCTGGATTGGAGAATTTGCCAAATTTGCTTTGGTTTGATGTATGTTCTATCTGTCATTGAGTTTAGAAGTTTCAGGAAGGGTACTGTGCCATTAGTTTCATCTTATAAAGGTTTACATATGCAAGGCTTTTGCGATGTTGAACCCGCGGAGAATAAGGTTAAAAAGATACATGAACAACTACAAGGGTTTGGACAAGTTGGTGCTGTTAATGTTTCTTACTGGTTTCAAAACCGTAACTCCAGAAGCAAACAAAAGAAAAGAATCTTGTACAACAAGAAACTAAAAACACAACAAAACTCTACTCCGTGTAACTCTCTTCCACAAATCCTCACACCACCACCCAACTCATTTTCCTCTGATCATCAAAAAGCCTCCATTGGATTCTCCAATATTAATGATGTGATGGTGTTGTTGCATGTTTCACCTGCAGGCGATGAAGATAGAAATCCTGGACCAAGGCCAAGATGGATTCCAAAGCCTGAGCAAATCCGCATTCTTGAAGCCATCTACAACTCAGGGATGAAGAATCCACCTGTAGATGAAATCAAGAAGATACGAGAACAATTACAAGAATTTGGACAAATTGGTGATGCGAGTGTCTTTTACTGGTTTCAAAACCGCAAGTCCAAAGGCAAAAACAAAAAAGCACCCTACCCCAAGAAATCAAAAAGACAACCAATTGCAGATCCAGCTCTTAATAACTCTCTCCCACAAATCACCACACCACCACCCAACTCATCTTCATCATCTTCCTCTAACAATATTATTGGAATCTCCAATATTAATGATGGGACGGTGATGGTGCCTAATTCACCTGCAATCTCTCTGAACCAAAACCAAGATGATACTTATCCTGACACCCTCGCTGAAACCGGTCTACAACTACCTACACCCCCATTTCCCTCTTTCCCGGTTGAGAATCATATTAATGAAAGGGTAGTGCTTAATGACATGACAACACTAGAGGGGTCTAATTACTTCTCTGATTTCCCGAATATGATTGAACCCTCACCTCAACAAAATGTTGATCTGCCTCTGCTGAATTATGATAACATCATGAACAATGAAAATGAAAATGGAATCTACTCAGTCCATGATCTTTTTTATCAAGAGAATATTCAAGAGGAAGCGATGAATATGATGCACATGCACCAACAAGACCCACAATTTAATTTTGGTGTCACGACAACTTCAAGTAATGATGATTCAACTGATCTTGCTCCTCTACCTCCGGCCATTGACATGAGTGCACCTGTTGATGTTCCATTCCTTTTTACCGGTGATCAACTTCAAGGTTTTGGTGAGGAAGATGGTATGAAAAAATGTAGGGTGTTTACTACCAATGAAGTAATCGAGGTTAACGCTGGGCCCTTTAACGTTCGTGAATCCTTTGGTAATAGAGCAGTTCTGTTTGACTCCTTCAGTACCCCGGTTCTAACTGATGAATGGGGTGTCACCCTCAACTCACTCTACCATGGGGCTGATTATTATCTGCTATATCTTTGA 1896 0.4082 MVWRQFLNRLPTKYNLSLRGVRLNSSLYCVGGCGRLETVNHILFNRAVLWSIWSESLKWLGVLAVFVEGGFERLILFKGLVAGGKTVCERLGVILVSIISSIWNARNAKEASGSGVGLISCKECGILNVDLDWRICQICFGLMYVLSVIEFRSFRKGTVPLVSSYKGLHMQGFCDVEPAENKVKKIHEQLQGFGQVGAVNVSYWFQNRNSRSKQKKRILYNKKLKTQQNSTPCNSLPQILTPPPNSFSSDHQKASIGFSNINDVMVLLHVSPAGDEDRNPGPRPRWIPKPEQIRILEAIYNSGMKNPPVDEIKKIREQLQEFGQIGDASVFYWFQNRKSKGKNKKAPYPKKSKRQPIADPALNNSLPQITTPPPNSSSSSSSNNIIGISNINDGTVMVPNSPAISLNQNQDDTYPDTLAETGLQLPTPPFPSFPVENHINERVVLNDMTTLEGSNYFSDFPNMIEPSPQQNVDLPLLNYDNIMNNENENGIYSVHDLFYQENIQEEAMNMMHMHQQDPQFNFGVTTTSSNDDSTDLAPLPPAIDMSAPVDVPFLFTGDQLQGFGEEDGMKKCRVFTTNEVIEVNAGPFNVRESFGNRAVLFDSFSTPVLTDEWGVTLNSLYHGADYYLLYL* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2898 631 Pfam Homeodomain 283 342 IPR001356 GO:0003677
Mtr4g2898 631 ProSiteProfiles 'Homeobox' domain profile. 279 344 IPR001356 GO:0003677
Mtr4g2898 631 PANTHER WUSCHEL-RELATED HOMEOBOX 9 274 629 - -
Mtr4g2898 631 PANTHER WUSCHEL-RELATED HOMEOBOX 9 175 272 - -
Mtr4g2898 631 MobiDBLite consensus disorder prediction 340 386 - -
Mtr4g2898 631 SUPERFAMILY Homeodomain-like 279 344 IPR009057 -
Mtr4g2898 631 SMART HOX_1 281 348 IPR001356 GO:0003677
Mtr4g2898 631 MobiDBLite consensus disorder prediction 358 386 - -
Mtr4g2898 631 Gene3D - 282 347 - -
Mtr4g2898 631 PANTHER WUSCHEL-RELATED HOMEOBOX 9 274 629 IPR044557 GO:0003700|GO:0050793
Mtr4g2898 631 PANTHER WUSCHEL-RELATED HOMEOBOX 9 175 272 IPR044557 GO:0003700|GO:0050793
Mtr4g2898 631 CDD homeodomain 282 345 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2898 Mtr-Chr4 42641512 42648684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2898 277 344 Wox Gene Family AT2G33880 73.529 2.50e-29 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Mtr4g2898 Homeodomain 8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2898 - - mtr:MTR_4g088070 669.848