Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2896 ATGATAAACAAAACAGCATGTGCTCCTTGTAGACACCAAAAGAAAAAGTGCATGAAAGATTGCTTCCTTGCTCCTTATTATCCAACGAAGAAGAAACAAGAATACGACCTTGTTCACAAAGTTTTTGGTTACAAAAAGTTGGAAAAAATGCTCAGAAACCTTGATGAACAAGGAAGAAAAAAAGCCATCGAGTCTTTTGATTGGGAAGCAAAGATGTGGAAACAAGACCCAATCAATGGTCCACTTGGTGCATTCACTGAAGCTCAGAATGAAATAGCACGACTACAAAACCTACTCCAACAACAGCAAGACCAAACTGTTCCATCTTCTGACCCCAAATTTATGGGTCTTGCCCAAAATTCATTCTCTTACAATAGTGATGCTGTACCTGTTTCAAGCAATGGAAATTGGTCTTCTTTTGAGGCCCCTTTTGTGGCTAACAACAATGTTGTACATAATCCCTATTTTGAATATCCTTATGGAGGAAATAGCTTTGGAAGTATAGGTGCTTTGCAAAACGAGGAAACAAATTTATTGAACTGTGTTGTTGCTGGTCCTAATGTTTGGCAACCTTCACAACCCAATTATTTGCAAAGTCTTGCAAGTAGTTCTGGGACTAAAGTGACTGTGGATCATAATATTATTACCAATCAACATATGGGAATGCAAGGAGAAGGTCAGCAGCATTCTAAGTATTATTCTTTTGGAAACTGTAAGGAATTCTTTTCACTGCTTTTGTCTCTTGTTGGAATTGATATTTGTGCACCATTTTCTTTGGCATCTTTTTTGTTGAATATAAAGTGTTGA 807 0.3717 MINKTACAPCRHQKKKCMKDCFLAPYYPTKKKQEYDLVHKVFGYKKLEKMLRNLDEQGRKKAIESFDWEAKMWKQDPINGPLGAFTEAQNEIARLQNLLQQQQDQTVPSSDPKFMGLAQNSFSYNSDAVPVSSNGNWSSFEAPFVANNNVVHNPYFEYPYGGNSFGSIGALQNEETNLLNCVVAGPNVWQPSQPNYLQSLASSSGTKVTVDHNIITNQHMGMQGEGQQHSKYYSFGNCKEFFSLLLSLVGIDICAPFSLASFLLNIKC* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2896 268 Coils Coil 85 105 - -
Mtr4g2896 268 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Mtr4g2896 268 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Mtr4g2896 268 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 230 - -
Mtr4g2896 268 PANTHER LOB DOMAIN-CONTAINING PROTEIN 5-RELATED 3 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2896 Mtr-Chr4 42629268 42630074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2896 6 102 AS2 family AT1G06280 41.837 8.75e-24 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr4g2896 LOB 2.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2896 - - mtr:MTR_4g088035 537.339