Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2893 ATGGCCTTAAATTTTATCTCACAAAGTGAGTTACCCCTTAATGAAAATGATTCTCAAGACATGGTTATATACCAAATTCTTAAGGAAGCTAATGAACTTAGCAACACAATGGTGCAAGAGAGGCACCAAAATGGCCTAGAACAAAGCAAGAGCATTAAAAAGAAGAATTACAGAGGTGTAAGGCGTCGACCGTGGGGAAAATATGCAGCAGAGATTCGTGACTCGAAGCAAAATGGAGCTAGGATATGGCTTGGTACATTTCAAACAGCTGAAGAGGCTGCAATTGCTTATGATAAAGCTGCTTTCAGAATGAGGGGTGCTAAAGCTTTGTTGAATTTCCCACATGATTTTTCTGCTCAAGGAAAATAA 369 0.393 MALNFISQSELPLNENDSQDMVIYQILKEANELSNTMVQERHQNGLEQSKSIKKKNYRGVRRRPWGKYAAEIRDSKQNGARIWLGTFQTAEEAAIAYDKAAFRMRGAKALLNFPHDFSAQGK* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2893 122 SUPERFAMILY DNA-binding domain 56 116 IPR016177 GO:0003677
Mtr4g2893 122 Gene3D AP2/ERF domain 55 115 IPR036955 GO:0003700|GO:0006355
Mtr4g2893 122 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 7 115 - -
Mtr4g2893 122 CDD AP2 55 116 IPR001471 GO:0003700|GO:0006355
Mtr4g2893 122 SMART rav1_2 56 120 IPR001471 GO:0003700|GO:0006355
Mtr4g2893 122 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Mtr4g2893 122 ProSiteProfiles AP2/ERF domain profile. 56 114 IPR001471 GO:0003700|GO:0006355
Mtr4g2893 122 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Mtr4g2893 122 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Mtr4g2893 122 PANTHER DNA-BINDING DOMAIN 7 115 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2893 Mtr-Chr4 42608667 42609359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2893 11 114 AP2-EREBP Transcription Factor Family AT5G47220 51.181 2.63e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr4g2893 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2893 K13433 - zju:107411165 167.162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2893 4 42608667 42609359 Mtr4g2893 4 42608667 42609359 ECH