Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2887 ATGCATTTCCCATTCACTACTAGTCCTCAATCACTAGCAATAACTTGCCTCTCCTATTTATTCATCTCATTGGTTTTCATCAATGGCTACCAAGCTGAGGTTAGGAGTGGAAACAACAAAGTTATATCTATAGGTGTAATAATTGATGTTAACTCTAGAGTTGGGAAAGAACAAAGAGTAGCCATGGATATTGCAGCTCAAAATTACAATAACACTTCAAATGCCAACAAGCTGGCTCTCTATTTTCAGGAACCTAACAAGGGTTCCTTCAGAGCCATGTCTCTTGCTGAAGAAATGATTAAAAACCAGAAGGTGGATGTGATTGTAGGGATGCAAACATGGACAGAAGCAGCTTCAGTGGCTGAATTAGTACATGAAGATCAAGATGAAGTTCCTATCATATCCTTTGTAGCACCGGCAATTACTCCACATTTGATGCCGATTCGTTGGCCTTCTTTGGTAAGACTAGCTAACAATGGAACAGCATATGCAAAATGCATTGCTGATTTGGTTCATGTTTATAATTGGCATAGTGTAGTAGCCATCTATGAAGATGATGCATATGGTGGTGAGTCTGGGATGCTAGCACTTCTATCCGAGGCCCTCCAAGAGATTGGTTCAATGATTGAATATCGTTTAGCTTTGCCATCACTTACTTATATGTCTAATCCAGGAGAATTTATTCGACAAGAGCTGTTTAAGATAACCAGAAACACACAATCTCGGGTATTCGTTGTATTGAAATCATCATTAGAAATGGGCATTCATTTGTTTAAGGAAGCTTCACAAATGGGACTAGTGGATAGAAATTCAGCTTGGATAGTCTCAGAGAGCATAACTAATTTGTTGGATTCTGTCAATAAGTCGAGTATTTCTTATATGGAAGGAGCTTTAGGAATCAAAACATACTACTCAGAAAACAGCAATGAATATAAAGATTTTGAGGTTCAGTTTAGGAAAGCTTTTCGAGACAAGAATCCTGACGAAGATAACAGGGATCCGGGATTTTATGCTTTGCAAGCATATGACAGCATTCAAATGGTTGGACATGCAATAAACAGAATGGCTAGTGATAACAAGACTTTACTACAAGAAATAGTGTCCAGCAAATTCCTTGGTTTAAGTGGAGAAATTCAATTTGAATCAGAACAGCTTTCGCAGAATCCTACATTGAGGATTGTAAATGTAGATGGAAAGAGTTACAGAGAATTAGACTTTTGGACTCTAGAAAATGGATTCTTCACTAACATCTCCACAAAACAAGTTAAAAATGGTGCTTCTAGGAACTCAGAAAGTTTAAGTGGTGCAGTAATTTGGCCTGGAAAGTTGCTTAGAGCTCCAAAGGGATGGAACCTACCTACTAAACAAAAACCAATGAGAATTGCAGTCCCTGGAAGAACTTCATTTTCCAAATTTGTCAAGGTTGATTCTGATGAGGAAGGAAATCCAAAATATAGTGGATTTTGCATTGAAATTTTTGAGAAGGTTTTAACAATTTTGGGCTATGATCTTCCATATGACTATTATCCCATCAACGCAACCTATAATGATCTGGTTCAACTTGTTTATAACAAGACTTATGACGGTGTTGTTGGCGACATGACCATACTGGCAGAGAGATTGCAATATGTAGATTTTACTGTGCCATATGCAGAGTCAGGATTGTCGATGATAGTTACGGAGAAGTCTGAAGAATCAGCATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGTGGTAACTGGTGTCATCTTGATTTATACAATGGTAGTAGTGTGGTACCTGGAGAGGGAAGATAATCCAGAGTTTCAAGGCAATTGGAAAAACCAAATCATCACTTCATTTGGATTTACTTTCTCCTCGCTATTCTTTGCTCATAGAGAGAAAATGCATAGCAATTTATCTCGTATAGTAATGGTATCATGGCTGTTTCTAGTTTTGATTCTTAATTCAAGCTACACTGCAAGTCTTTCTTCAATGCTCACAGTTCAACAACTGCGAGCAAATATCACCAACATTGAGTGGTTGAAGAAGAACGACATGAAAATTGGTTGTGATGGAGATTCATTTGTTAGGACATACCTAGTGGAAGTCGAAAAATTCAAACCAGAGAACATCGTAAACATTAGTAATGAAAATAATTATGACCCTGGATTCAAAAACTACTCAATTGCTGCTGCTTTTCTTGAACTCCCTTATGAGAAAGTATACATCAGTAAATACTGCAAGGGGTACTCTGCTTCTACACCTACCACTAGATTTGGAGGACTTGGATTTATGTTCCAGAAAGGCTCTCCTTTGGCCAGAGATGTTTCTAAAGCTATTTTGCAGCTCTTACAGCAGGGTGAGTTGAAGAAACTAGAAGATATTTGGTTGAATCCCACAGGTGTGTGCTCCAACAATTTGAACTCCAAGAGTACAGAAAGTTTGAAGCTGGGAAGTTTCTGGATTCTCTATGTGATTTCTGGTGCCACTTCTACTATTTGTTTTCTACTTTCTACCATCCACTCACTAAAAAATAATAAGTCACAAGAAAGTAATGGATCCCCAGATGATGTGAGCAGATGGAAAAGGGTGGTTACATTAACAAGGAAGATTTGTAGCAGAAAGCATAATAAAACCAGCCAGGTACAGGAAGATGTTACTGATTGTCCTTCCGGATGCGATTGCATCAGTAGCCCTGAGCATCAGCAGGGAATGGATCTTCAATTACCAGAAATCATAACAATATCTTCACCACCAACACATGATCAGATGTAA 2763 0.3829 MHFPFTTSPQSLAITCLSYLFISLVFINGYQAEVRSGNNKVISIGVIIDVNSRVGKEQRVAMDIAAQNYNNTSNANKLALYFQEPNKGSFRAMSLAEEMIKNQKVDVIVGMQTWTEAASVAELVHEDQDEVPIISFVAPAITPHLMPIRWPSLVRLANNGTAYAKCIADLVHVYNWHSVVAIYEDDAYGGESGMLALLSEALQEIGSMIEYRLALPSLTYMSNPGEFIRQELFKITRNTQSRVFVVLKSSLEMGIHLFKEASQMGLVDRNSAWIVSESITNLLDSVNKSSISYMEGALGIKTYYSENSNEYKDFEVQFRKAFRDKNPDEDNRDPGFYALQAYDSIQMVGHAINRMASDNKTLLQEIVSSKFLGLSGEIQFESEQLSQNPTLRIVNVDGKSYRELDFWTLENGFFTNISTKQVKNGASRNSESLSGAVIWPGKLLRAPKGWNLPTKQKPMRIAVPGRTSFSKFVKVDSDEEGNPKYSGFCIEIFEKVLTILGYDLPYDYYPINATYNDLVQLVYNKTYDGVVGDMTILAERLQYVDFTVPYAESGLSMIVTEKSEESAWMFMKPFTWQMWVVTGVILIYTMVVVWYLEREDNPEFQGNWKNQIITSFGFTFSSLFFAHREKMHSNLSRIVMVSWLFLVLILNSSYTASLSSMLTVQQLRANITNIEWLKKNDMKIGCDGDSFVRTYLVEVEKFKPENIVNISNENNYDPGFKNYSIAAAFLELPYEKVYISKYCKGYSASTPTTRFGGLGFMFQKGSPLARDVSKAILQLLQQGELKKLEDIWLNPTGVCSNNLNSKSTESLKLGSFWILYVISGATSTICFLLSTIHSLKNNKSQESNGSPDDVSRWKRVVTLTRKICSRKHNKTSQVQEDVTDCPSGCDCISSPEHQQGMDLQLPEIITISSPPTHDQM* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2887 920 SUPERFAMILY Periplasmic binding protein-like I 37 450 IPR028082 -
Mtr4g2887 920 CDD GluR_Plant 457 793 - -
Mtr4g2887 920 PIRSF IGluLR_plant 11 905 IPR017103 -
Mtr4g2887 920 Gene3D - 163 332 - -
Mtr4g2887 920 Gene3D - 36 162 - -
Mtr4g2887 920 SUPERFAMILY Periplasmic binding protein-like II 435 794 - -
Mtr4g2887 920 PANTHER GLUTAMATE RECEPTOR 3.4 23 898 - -
Mtr4g2887 920 Gene3D - 567 696 - -
Mtr4g2887 920 Gene3D - 336 462 - -
Mtr4g2887 920 Gene3D - 466 566 - -
Mtr4g2887 920 Pfam Receptor family ligand binding region 60 398 IPR001828 -
Mtr4g2887 920 Gene3D - 697 796 - -
Mtr4g2887 920 SMART GluR_14 460 795 IPR001320 GO:0015276|GO:0016020
Mtr4g2887 920 Pfam Bacterial extracellular solute-binding proteins, family 3 482 794 IPR001638 -
Mtr4g2887 920 Pfam Ligand-gated ion channel 795 824 IPR001320 GO:0015276|GO:0016020
Mtr4g2887 920 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 898 - -
Mtr4g2887 920 CDD PBP1_GABAb_receptor_plant 43 417 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2887 Mtr-Chr4 42564399 42568144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2887 18 843 Ion Channels AT2G29120 33.449 1.82e-141 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2887 - - aprc:113859865 1291.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2887 4 42564399 42568144 Mtr4g2887 4 42564399 42568144 ECH